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Series GSE199919 Query DataSets for GSE199919
Status Public on Jun 13, 2022
Title RB-loss determines selective resistance and novel vulnerabilities in breast cancer modelsRB loss
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The retinoblastoma tumor suppressor (RB1) plays a critical role in coordinating multiple pathways that impact on tumor initiation, disease progression, and therapeutic responses. Here we interrogated the effect of cIAP inhibitor, birinapant in two different isogenic ER+ breast cancer models. Using MCF7-WT and MCF7-RB-del cell lines we investigated the differential gene expression pattern that link the effect of CIAP inhibition and RB dependency .
 
Overall design MCF7-WT and MCF7-RB-del cells were treated with birinapant at a concentration of 500 nM for 48 hours. RNA was extracted using Quiagen Rneasy plus kit.
 
Citation(s) 35676324
Submission date Apr 01, 2022
Last update date Sep 12, 2022
Contact name Jianxin Wang
Organization name Roswell Park Comprehensive Cancer Center
Department Molecular and Cellular Biology
Street address 665 Elm Street
City Buffalo
State/province NY
ZIP/Postal code 14203
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (11)
GSM5993685 MCF7-RBpos-DMSO, biol rep1
GSM5993686 MCF7-RBpos-birina, biol rep1
GSM5993687 MCF7-RBpos-birina, biol rep2
Relations
BioProject PRJNA822087

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Supplementary file Size Download File type/resource
GSE199919_RAW.tar 30.0 Mb (http)(custom) TAR (of RESULTS)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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