GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Series GSE198232
Query DataSets for GSE198232
Status
Public on Oct 18, 2023
Title
Cytosolic pattern recognition receptors respond to EZH2-inhibition induced viral mimicry response that eliminates splenic B cells
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by array
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
37934086
Submission date
Mar 09, 2022
Last update date
Jan 05, 2024
Contact name
Frederick Andrew Dick
E-mail(s)
fdick@uwo.ca
Organization name
Western University
Department
Pathology
Lab
A4-VRL LRCP
Street address
790 Commissioners Road E
City
London
State/province
ON
ZIP/Postal code
N6A 4L6
Country
Canada
Platforms (2)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL30650
Infinium Mouse Methylation BeadChip
Samples (70)
Less...
More...
GSM5939956
Splenocyte-DMSO Rep1
GSM5939957
Splenocyte-DMSO Rep2
GSM5939958
Splenocyte-DMSO Rep3
GSM5939959
Splenocyte-GSK343 Rep1
GSM5939960
Splenocyte-GSK343 Rep2
GSM5939961
Splenocyte-GSK343 Rep3
GSM5939962
WT-B-DMSO Rep1
GSM5939963
WT-B-DMSO Rep2
GSM5939964
WT-B-DMSO Rep3
GSM5939965
WT-B-GSK343 Rep1
GSM5939966
WT-B-GSK343 Rep2
GSM5939967
WT-B-GSK343 Rep3
GSM5939968
Mutant-B-DMSO Rep1
GSM5939969
Mutant-B-DMSO Rep2
GSM5939970
Mutant-B-DMSO Rep3
GSM5939971
Mutant-B-GSK343 Rep1
GSM5939972
Mutant-B-GSK343 Rep2
GSM5939973
Mutant-B-GSK343 Rep3
GSM7173231
B cell DMSO rep1
GSM7173232
B cell GSK343 rep1
GSM7173233
CD43 cell DMSO rep1
GSM7173234
CD43 cell GSK343 rep1
GSM7173235
B cell DMSO rep2
GSM7173236
B cell GSK343 rep2
GSM7173237
CD43 cell DMSO rep2
GSM7173238
CD43 cell GSK343 rep2
GSM7173239
B cell DMSO rep3
GSM7173240
B cell GSK343 rep3
GSM7173241
CD43 cell DMSO rep3
GSM7173242
CD43 cell GSK343 rep3
GSM7653205
WT B cells H3K27me3 ChIP DMSO Rep1
GSM7653206
WT B cells H3K27me3 input DMSO Rep1
GSM7653207
WT B cells H3K27me3 ChIP DMSO Rep2
GSM7653208
WT B cells H3K27me3 input DMSO Rep2
GSM7653209
WT B cells H3K27me3 ChIP GSK343 Rep1
GSM7653210
WT B cells H3K27me3 input GSK343 Rep1
GSM7653211
WT B cells H3K27me3 ChIP GSK343 Rep2
GSM7653212
WT B cells H3K27me3 input GSK343 Rep2
GSM7653213
Mutant B cells H3K27me3 ChIP DMSO Rep1
GSM7653214
Mutant B cells H3K27me3 input DMSO Rep1
GSM7653215
Mutant B cells H3K27me3 ChIP DMSO Rep2
GSM7653216
Mutant B cells H3K27me3 input DMSO Rep2
GSM7653217
Mutant B cells H3K27me3 ChIP GSK343 Rep1
GSM7653218
Mutant B cells H3K27me3 input GSK343 Rep1
GSM7653219
Mutant B cells H3K27me3 ChIP GSK343 Rep2
GSM7653220
Mutant B cells H3K27me3 input GSK343 Rep2
GSM7676084
Control DMSO Rep1
GSM7676085
Control DMSO Rep2
GSM7676086
Control DMSO Rep3
GSM7676087
Control GSK343 Rep1
GSM7676088
Control GSK343 Rep2
GSM7676089
Control GSK343 Rep3
GSM7676090
RIG DMSO Rep1
GSM7676091
RIG DMSO Rep2
GSM7676092
RIG DMSO Rep3
GSM7676093
RIG GSK343 Rep1
GSM7676094
RIG GSK343 Rep2
GSM7676095
RIG GSK343 Rep3
GSM7676096
Cgas DMSO Rep1
GSM7676097
Cgas DMSO Rep2
GSM7676098
Cgas DMSO Rep3
GSM7676099
Cgas GSK343 Rep1
GSM7676100
Cgas GSK343 Rep2
GSM7676101
Cgas GSK343 Rep3
GSM7676102
DKO DMSO Rep1
GSM7676103
DKO DMSO Rep2
GSM7676104
DKO DMSO Rep3
GSM7676105
DKO GSK343 Rep1
GSM7676106
DKO GSK343 Rep2
GSM7676107
DKO GSK343 Rep3
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE198158
EZH2 inhibition with GSK343 reduces H3K27me3 deposition at various repetitive elements in splenic B cells [ChIP-Seq]
GSE198159
Cytosolic PRRs are required to upregulate inflammatory gene expression upon EZH2 inhibition with GSK343
GSE229684
Splenic CD43- B cells exhibit DNA hypomethylation specifically at repetitive elements compared to CD43+ cells
GSE239879
Cytosolic PRRs are required to upregulate interferon gene expression upon EZH2 inhibition with GSK343 in B16-F10 melanoma cells [RNA-seq]
Relations
BioProject
PRJNA814248
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE198232_RAW.tar
2.4 Gb
(http)
(custom)
TAR (of BW, CSV, IDAT, TXT)
SRA Run Selector
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
Less...
More...