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Series GSE197877 Query DataSets for GSE197877
Status Public on Jan 26, 2023
Title Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis
Organisms Xenopus laevis; Xenopus tropicalis; Xenopus tropicalis x Xenopus laevis
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
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Submission date Mar 03, 2022
Last update date Jan 27, 2023
Contact name Chuihui Hou
E-mail(s) houch@sustech.edu.cn
Organization name Southern University of Science and Technology
Street address Xueyuan Avenue
City Shenzhen
State/province Guangdong
ZIP/Postal code 518055
Country China
 
Platforms (4)
GPL30213 HiSeq X Ten (Xenopus tropicalis)
GPL31294 HiSeq X Ten (Xenopus laevis)
GPL32015 HiSeq X Ten (Xenopus tropicalis x Xenopus laevis)
Samples (67)
GSM5931473 xenopus tropicalis sperm-CTCF_rep1
GSM5931474 xenopus tropicalis sperm-CTCF_rep2
GSM5931475 xenopus tropicalis sperm-RPB2_rep1
This SuperSeries is composed of the following SubSeries:
GSE197866 Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ChIP-Seq]
GSE197867 Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ATAC-Seq]
GSE197873 Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [Hi-C]
Relations
BioProject PRJNA812551

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE197877_RAW.tar 9.3 Gb (http)(custom) TAR (of BW, COOL, HIC, TXT)
SRA Run SelectorHelp

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