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Series GSE197785 Query DataSets for GSE197785
Status Public on Jan 31, 2023
Title Sensory nerve niche regulates mesenchymal stem cell homeostasis via FGF/mTOR/autophagy axis [RNA-seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The goal of this study is to compare transcriptome profiling (RNA-seq) of proximal end of incisor 1 week after TMX induction between control and Fgfr1 mutant mice
 
Overall design mRNA profiles of control and Fgfr1 mutant mice were generated by deep sequencing, in triplicate, using NextSeq500 High Output. The quality of RNA samples was determined using an Agilent 2100 Bioanalyzer and all samples for sequencing had RNA integrity numbers >9.
 
Citation(s) 36670126
Submission date Mar 02, 2022
Last update date Feb 08, 2023
Contact name Fei Pei
E-mail(s) fp_191@usc.edu
Phone 2132454762
Organization name USC
Street address 2250 Alcazar St
City Los Angeles
State/province CA
ZIP/Postal code 90033
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (6)
GSM5930406 Control 1 [Ctrl_2_S1]
GSM5930407 Control 2 [Ctrl_3_S2]
GSM5930408 Control 3 [Ctrl_4_S3]
This SubSeries is part of SuperSeries:
GSE197787 Sensory nerve niche regulates mesenchymal stem cell homeostasis via FGF/mTOR/autophagy axis.
Relations
BioProject PRJNA812043

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE197785_GSA_result_gene_list.txt.gz 1.0 Mb (ftp)(http) TXT
GSE197785_Partek_Fei_Fgfr1incisor_Feb2022_Filter_features_Filtered_counts.txt.gz 316.3 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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