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Series GSE197110 Query DataSets for GSE197110
Status Public on Apr 28, 2022
Title Time-course of host cell transcription during the HTLV-1 transcriptional burst
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We report the host cell transcription during the phases of the HTLV-1 plus-strand burst.
Overall design We used two naturally HTLV-1-infected clones isolated from patient blood, which were transduced with a Tax-responsive Timer construct reporter, that allowed the separation of proviral plus-strand burst into silent (DN – double negative), early (Blue), mid (DP – double positive), late phases (Red). The cells were sorted into these populations based on the Timer fluorescence and submitted to RNA sequencing. Each timepoint had two replicates.
Contributor(s) Bangham CR, Ramanayake S, Kiik H
Citation(s) 35576236
Submission date Feb 21, 2022
Last update date May 17, 2022
Contact name Charles R. M. Bangham
Phone +44 20 7594 3730
Organization name Imperial College London
Department Infectious Disease
Lab Bangham Lab
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (16)
GSM5909294 TBX4B_DN1
GSM5909295 TBX4B_Blue1
GSM5909296 TBX4B_DP1
BioProject PRJNA808996

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE197110_RAW.tar 25.4 Mb (http)(custom) TAR (of RESULTS)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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