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Series GSE194328 Query DataSets for GSE194328
Status Public on Oct 24, 2022
Title Single cell RNA sequencing analysis of purified MAIT and Vdelta2 (Vd2) subset of gamma delta T cells in allo-HCT patients and healthy controls
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Other
Summary We report the transcriptional changes of MAIT and Vd2 cells in the patients receiving allogeneic stem cell transplantation with good outcome compared to MAIT and Vdelta2 cells of healthy volunteers
 
Overall design Comparison of MAIT and Vd2 cells collected from 5 patients and 5 healthy control subjects
 
Contributor(s) Kousa AI, Andrlová H, Chaligne R, Masilionis I, van den Brink MR, Markey KA
Citation(s) 35613281
Submission date Jan 25, 2022
Last update date May 20, 2023
Contact name Anastasia I Kousa
E-mail(s) akousa@coh.org
Organization name City of Hope
Department Hematology / HCT
Lab The Marcel van den Brink Lab
Street address 1500 E Duarte Rd
City Duarte
State/province CA
ZIP/Postal code 91010
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (4)
GSM5833524 Vd2 cells healthy
GSM5833525 MAIT cells healthy
GSM5833526 Vd2 cells patients
Relations
BioProject PRJNA800335

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE194328_MAIT_clean.h5ad.gz 68.5 Mb (ftp)(http) H5AD
GSE194328_RAW.tar 27.4 Gb (http)(custom) TAR (of CSV, H5, H5AD, HTML, JSON, MTX, PDF, PNG, TAR, TSV, TXT)
GSE194328_Vd2_clean.h5ad.gz 56.4 Mb (ftp)(http) H5AD
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Raw data are available in SRA
Processed data provided as supplementary file

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