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Status |
Public on Oct 24, 2022 |
Title |
Single cell RNA sequencing analysis of purified MAIT and Vdelta2 (Vd2) subset of gamma delta T cells in allo-HCT patients and healthy controls |
Organism |
Homo sapiens |
Experiment type |
Expression profiling by high throughput sequencing Other
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Summary |
We report the transcriptional changes of MAIT and Vd2 cells in the patients receiving allogeneic stem cell transplantation with good outcome compared to MAIT and Vdelta2 cells of healthy volunteers
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Overall design |
Comparison of MAIT and Vd2 cells collected from 5 patients and 5 healthy control subjects
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Contributor(s) |
Kousa AI, Andrlová H, Chaligne R, Masilionis I, van den Brink MR, Markey KA |
Citation(s) |
35613281 |
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Submission date |
Jan 25, 2022 |
Last update date |
May 20, 2023 |
Contact name |
Anastasia I Kousa |
E-mail(s) |
akousa@coh.org
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Organization name |
City of Hope
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Department |
Hematology / HCT
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Lab |
The Marcel van den Brink Lab
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Street address |
1500 E Duarte Rd
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City |
Duarte |
State/province |
CA |
ZIP/Postal code |
91010 |
Country |
USA |
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Platforms (1) |
GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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Samples (4)
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Relations |
BioProject |
PRJNA800335 |
Supplementary file |
Size |
Download |
File type/resource |
GSE194328_MAIT_clean.h5ad.gz |
68.5 Mb |
(ftp)(http) |
H5AD |
GSE194328_RAW.tar |
27.4 Gb |
(http)(custom) |
TAR (of CSV, H5, H5AD, HTML, JSON, MTX, PDF, PNG, TAR, TSV, TXT) |
GSE194328_Vd2_clean.h5ad.gz |
56.4 Mb |
(ftp)(http) |
H5AD |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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