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Series GSE194231 Query DataSets for GSE194231
Status Public on Jun 16, 2022
Title Thymic epithelial cells co-opt lineage-defining transcription factors to eliminate autoreactive T cells [CUT&TAG]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We profiled medullary thymic epithelial cells by CUT&Tag to investigate mechanisms of T-cell tolerance.
 
Overall design CUT&Tag of mTECs
 
Contributor(s) Michelson DA, Mathis D, Benoist C
Citation(s) 35714609
Submission date Jan 23, 2022
Last update date Aug 30, 2022
Contact name CBDM Lab
E-mail(s) cbdm@hms.harvard.edu
Phone 617-432-7747
Organization name Harvard Medical School
Department Microbiology and Immunobiology
Lab CBDM
Street address 77 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
 
Platforms (3)
GPL16417 Illumina MiSeq (Mus musculus)
GPL19057 Illumina NextSeq 500 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (19)
GSM5831251 Pou2f3.mTEC.rep#1
GSM5831252 Pou2f3.mTEC.rep#2
GSM5831253 Pou2f3.mTEC.rep#3
This SubSeries is part of SuperSeries:
GSE194253 Thymic epithelial cells co-opt lineage-defining transcription factors to eliminate autoreactive T cells
Relations
BioProject PRJNA799776

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE194231_MEC_Grhl1.merged.CPM.bigwig 10.3 Mb (ftp)(http) BIGWIG
GSE194231_MEC_H3K27ac.merged.CPM.bigwig 18.8 Mb (ftp)(http) BIGWIG
GSE194231_MEC_Hnf4a.merged.CPM.bigwig 29.4 Mb (ftp)(http) BIGWIG
GSE194231_MEC_IgG.merged.CPM.bigwig 389.1 Kb (ftp)(http) BIGWIG
GSE194231_MEC_Pou2f3.merged.CPM.bigwig 3.5 Mb (ftp)(http) BIGWIG
GSE194231_RAW.tar 61.2 Mb (http)(custom) TAR (of BIGWIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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