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GEO accession:
Series GSE192779
Query DataSets for GSE192779
Status
Public on Jun 05, 2023
Title
The SWI/SNF subunit Dpf2 licenses Nrf2-dependent gene expression to enforce multilineage control of inflammation
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
37200093
Submission date
Dec 29, 2021
Last update date
Jun 08, 2023
Contact name
Gloria Mas Martin
E-mail(s)
gloriamasmartin@gmail.com
Organization name
University of Miami
Street address
1501 NW 10th Avenue
City
Miami
State/province
Florida
ZIP/Postal code
33136
Country
USA
Platforms (4)
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GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (108)
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GSM5765198
RNAseq_Dpf2f/f LK rep1
GSM5765199
RNAseq_Dpf2f/f LK rep2
GSM5765200
RNAseq_Dpf2f/f LK rep3
GSM5765201
RNAseq_Dpf2D/D LK rep1
GSM5765202
RNAseq_Dpf2D/D LK rep3
GSM5765203
RNAseq_Dpf2D/D LK rep4
GSM5765204
RNAseq_Dpf2D/D LK rep5
GSM5765205
RNAseq_Dpf2f/f_M0_rep1
GSM5765206
RNAseq_Dpf2f/f_M0_rep2
GSM5765207
RNAseq_Dpf2f/f_M0_rep3
GSM5765208
RNAseq_Dpf2f/f_M0_rep4
GSM5765209
RNAseq_Dpf2f/f_M0_rep5
GSM5765210
RNAseq_Dpf2D/D_M0_rep1
GSM5765211
RNAseq_Dpf2D/D_M0_rep2
GSM5765212
RNAseq_Dpf2D/D_M0_rep3
GSM5765213
RNAseq_Dpf2D/D_M0_rep4
GSM5765214
RNAseq_Dpf2D/D_M0_rep5
GSM5765215
RNAseq_Dpf2f/f_M1_rep1
GSM5765216
RNAseq_Dpf2f/f_M1_rep2
GSM5765217
RNAseq_Dpf2f/f_M1_rep3
GSM5765218
RNAseq_Dpf2f/f_M1_rep4
GSM5765219
RNAseq_Dpf2f/f_M1_rep5
GSM5765220
RNAseq_Dpf2D/D_M1_rep1
GSM5765221
RNAseq_Dpf2D/D_M1_rep2
GSM5765222
RNAseq_Dpf2D/D_M1_rep3
GSM5765223
RNAseq_Dpf2D/D_M1_rep4
GSM5765224
RNAseq_Dpf2D/D_M1_rep5
GSM5765225
RNAseq_Dpf2f/f_M2_rep1
GSM5765226
RNAseq_Dpf2f/f_M2_rep2
GSM5765227
RNAseq_Dpf2f/f_M2_rep3
GSM5765228
RNAseq_Dpf2f/f_M2_rep4
GSM5765229
RNAseq_Dpf2f/f_M2_rep5
GSM5765230
RNAseq_Dpf2D/D_M2_rep1
GSM5765231
RNAseq_Dpf2D/D_M2_rep2
GSM5765232
RNAseq_Dpf2D/D_M2_rep3
GSM5765233
RNAseq_Dpf2D/D_M2_rep4
GSM5765234
RNAseq_Dpf2D/D_M2_rep5
GSM5765235
RNAseq_Dpf2f/f_Tcells_not_stimulated_rep1
GSM5765236
RNAseq_Dpf2f/f_Tcells_not_stimulated_rep2
GSM5765237
RNAseq_Dpf2f/f_Tcells_not_stimulated_rep3
GSM5765238
RNAseq_Dpf2f/f_Tcells_not_stimulated_rep4
GSM5765239
RNAseq_Dpf2D/D_Tcells_not_stimulated_rep1
GSM5765240
RNAseq_Dpf2D/D_Tcells_not_stimulated_rep2
GSM5765241
RNAseq_Dpf2D/D_Tcells_not_stimulated_rep3
GSM5765242
RNAseq_Dpf2D/D_Tcells_not_stimulated_rep4
GSM5765243
RNAseq_Dpf2f/f_Tcells_Stimulated_rep1
GSM5765244
RNAseq_Dpf2f/f_Tcells_Stimulated_rep2
GSM5765245
RNAseq_Dpf2f/f_Tcells_Stimulated_rep3
GSM5765246
RNAseq_Dpf2f/f_Tcells_Stimulated_rep4
GSM5765247
RNAseq_Dpf2D/D_Tcells_Stimulated_rep1
GSM5765248
RNAseq_Dpf2D/D_Tcells_Stimulated_rep2
GSM5765249
RNAseq_Dpf2D/D_Tcells_Stimulated_rep3
GSM5765250
RNAseq_Dpf2D/D_Tcells_Stimulated_rep4
GSM5765251
RNAseq_SKNO1_Rep1
GSM5765252
RNAseq_SKNO1_Rep2
GSM5765253
RNAseq_SKNO1_Rep3
GSM5765254
RNAseq_SKNO1_Rep4
GSM5765255
RNAseq_SKNO1_DOX_Rep1
GSM5765256
RNAseq_SKNO1_DOX_Rep2
GSM5765257
RNAseq_SKNO1_DOX_Rep3
GSM5765258
RNAseq_SKNO1_DOX_Rep4
GSM5765259
RNAseq_SKNO1_shLuc_Rep1
GSM5765260
RNAseq_SKNO1_shLuc_Rep2
GSM5765261
RNAseq_SKNO1_shLuc_Rep3
GSM5765262
RNAseq_SKNO1_shLuc_Rep4
GSM5765263
RNAseq_SKNO1_shLuc_DOX_Rep1
GSM5765264
RNAseq_SKNO1_shLuc_DOX_Rep2
GSM5765265
RNAseq_SKNO1_shLuc_DOX_Rep3
GSM5765266
RNAseq_SKNO1_shLuc_DOX_Rep4
GSM5765267
RNAseq_SKNO1_shDpf2#1357_Rep1
GSM5765268
RNAseq_SKNO1_shDpf2#1357_Rep2
GSM5765269
RNAseq_SKNO1_shDpf2#1357_Rep3
GSM5765270
RNAseq_SKNO1_shDpf2#1357_Rep4
GSM5765271
RNAseq_SKNO1_shDpf2#1357_DOX_Rep1
GSM5765272
RNAseq_SKNO1_shDpf2#1357_DOX_Rep2
GSM5765273
RNAseq_SKNO1_shDpf2#1357_DOX_Rep3
GSM5765274
RNAseq_SKNO1_shDpf2#1357_DOX_Rep4
GSM5765275
RNAseq_SKNO1_shDpf2#2487_Rep1
GSM5765276
RNAseq_SKNO1_shDpf2#2487_Rep2
GSM5765277
RNAseq_SKNO1_shDpf2#2487_Rep3
GSM5765278
RNAseq_SKNO1_shDpf2#2487_Rep4
GSM5765279
RNAseq_SKNO1_shDpf2#2487_DOX_Rep1
GSM5765280
RNAseq_SKNO1_shDpf2#2487_DOX_Rep2
GSM5765281
RNAseq_SKNO1_shDpf2#2487_DOX_Rep3
GSM5765282
RNAseq_SKNO1_shDpf2#2487_DOX_Rep4
GSM5765283
ATACseq_Dpf2f/f LK rep1
GSM5765284
ATACseq_Dpf2f/f LK rep2
GSM5765285
ATACseq_Dpf2f/f LK rep3
GSM5765286
ATACseq_Dpf2f/f LK rep4
GSM5765287
ATACseq_Dpf2D/D LK rep1
GSM5765288
ATACseq_Dpf2D/D LK rep2
GSM5765289
ATACseq_Dpf2D/D LK rep3
GSM5765290
Cut&Run_Brg1_Dpf2f/f_LK_Exp6
GSM5765291
Cut&Run_Brg1_Dpf2D/D_LK_Exp6
GSM5765292
Cut&Run_Dpf2_Dpf2f/f_LK_Exp6
GSM5765293
Cut&Run_Dpf2_Dpf2D/D_LK_Exp6
GSM5765294
Cut&Run_Nrf2_Dpf2f/f_LK_Exp6
GSM5765295
Cut&Run_Nrf2_Dpf2D/D_LK_Exp6
GSM5765296
Cut&Run_IgG_Dpf2f/f_LK_Exp6
GSM5765297
Cut&Run_IgG_Dpf2D/D_LK_Exp6
GSM5765298
Cut&Run_H3K27ac_Dpf2f/f_LK_Exp6
GSM5765299
Cut&Run_H3K27ac_Dpf2D/D_LK_Exp6
GSM5765300
Cut&Run_H3K4me1_Dpf2f/f_LK_Exp6
GSM5765301
Cut&Run_H3K4me1_Dpf2D/D_LK_Exp6
GSM5765302
ChIPseq_SKNO1_shLuc_ARID1A
GSM5765303
ChIPseq_SKNO1_shDpf2_ARID1A
GSM5765304
ChIPseq_SKNO1_shLuc_Input
GSM5765305
ChIPseq_SKNO1_shDpf2_Input
This SuperSeries is composed of the following SubSeries:
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GSE192775
The SWI/SNF subunit Dpf2 licenses Nrf2-dependent gene expression to enforce multilineage control of inflammation [RNA-seq]
GSE192776
The SWI/SNF subunit Dpf2 licenses Nrf2-dependent gene expression to enforce multilineage control of inflammation [ATAC-seq]
GSE192777
The SWI/SNF subunit Dpf2 licenses Nrf2-dependent gene expression to enforce multilineage control of inflammation [CUT&RUN]
GSE192778
The SWI/SNF subunit Dpf2 licenses Nrf2-dependent gene expression to enforce multilineage control of inflammation [ChIP-seq]
Relations
BioProject
PRJNA793066
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE192779_RAW.tar
8.3 Gb
(http)
(custom)
TAR (of BIGWIG, BW, TXT)
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