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Series GSE19202 Query DataSets for GSE19202
Status Public on Nov 26, 2009
Title Genome-wide recognition of PML/RARa binding sites
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary PML/RARa is of crucial importance in acute promyelocytic leukemia (APL) both pathologically and therapeutically. Using a genome-wide approach, we identified in vivo PML/RARa binding sites in ZnSO4 treated PR9 cells. A total of 2,979 high quality binding sites were identified, representing 1,981 unique RefSeq genes.
The supplementary bed file contains all 2,979 high quality PML-RARa binding sites reported in the paper.
 
Overall design RARa ChIP in ZnSO4 induced PR9 cells vs. Input in ZnSO4 induced PR9 cells.
 
Contributor(s) Wang K, Zhang J
Citation(s) 20159610
Submission date Nov 25, 2009
Last update date Jan 21, 2015
Contact name Jiantao Shi
E-mail(s) jtshi@sibs.ac.cn
Organization name Rui-Jin Hospital affiliated to Shanghai Jiao Tong University School of Medicine (RJH-SJTU-SM)
Street address 197 Ruijin Rd II
City Shanghai
State/province Shanghai
ZIP/Postal code 200025
Country China
 
Platforms (1)
GPL5082 [Hs_PromPR] Affymetrix Human Promoter 1.0R Array
Samples (1)
GSM475999 PML-RARA_PR9_Zn_4H
This SubSeries is part of SuperSeries:
GSE19203 PML-RARa binding sites and their correlation with the gene expression in ATRA treated NB4 cells
Relations
BioProject PRJNA123675

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE19202_RAW.tar 163.9 Mb (http)(custom) TAR (of BAR, BED, CEL, TXT)
Processed data provided as supplementary file

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