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Series GSE190599 Query DataSets for GSE190599
Status Public on Jul 01, 2022
Title Genome-wide maps of ESR2 chromatin state in Mantle cell lymphoma cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary In order to elucidate chromatin binding regions of ESR2 in Mantle cell lymphoma, we used ESR2 antibodies, opti-mized chromatin-immunoprecipitation (ChIP), and performed ChIP-Seq of ESR2 over-expressed Granta-519 cells and Granta519-mock cells.We present for the first time, the cistrome of nuclear receptor ESR2 in Mantle cell lymphoma cell line.
 
Overall design Examination of ESR2 chromatin binding in ESR2 over-expressed Granta-519 cells and Granta519-mock cells. Each ChIP was performed twice.
 
Contributor(s) Okret S
Citation(s) 35804870
Submission date Dec 09, 2021
Last update date Jul 15, 2022
Contact name Dan Huang
E-mail(s) hdan0777@gmail.com
Organization name Karolinska Institutet
Department Biosciences and Nutrition
Street address Neo, Department of Biosciences and Nutrition, Huddinge, Stockholm.
City Stockholm
ZIP/Postal code 14183
Country Sweden
 
Platforms (1)
GPL30173 NextSeq 2000 (Homo sapiens)
Samples (6)
GSM5726181 Granta519-ESR2 ChIP-seq rep 1
GSM5726182 Granta519-ESR2 ChIP-seq rep 2
GSM5726183 Granta519-ESR2 input DNA
Relations
BioProject PRJNA787627

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE190599_RAW.tar 2.1 Gb (http)(custom) TAR (of BIGWIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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