GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE190599 Query DataSets for GSE190599
Status Public on Jul 01, 2022
Title Genome-wide maps of ESR2 chromatin state in Mantle cell lymphoma cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary In order to elucidate chromatin binding regions of ESR2 in Mantle cell lymphoma, we used ESR2 antibodies, opti-mized chromatin-immunoprecipitation (ChIP), and performed ChIP-Seq of ESR2 over-expressed Granta-519 cells and Granta519-mock cells.We present for the first time, the cistrome of nuclear receptor ESR2 in Mantle cell lymphoma cell line.
Overall design Examination of ESR2 chromatin binding in ESR2 over-expressed Granta-519 cells and Granta519-mock cells. Each ChIP was performed twice.
Contributor(s) Okret S
Citation(s) 35804870
Submission date Dec 09, 2021
Last update date Jul 15, 2022
Contact name Dan Huang
Organization name Karolinska Institutet
Department Biosciences and Nutrition
Street address Neo, Department of Biosciences and Nutrition, Huddinge, Stockholm.
City Stockholm
ZIP/Postal code 14183
Country Sweden
Platforms (1)
GPL30173 NextSeq 2000 (Homo sapiens)
Samples (6)
GSM5726181 Granta519-ESR2 ChIP-seq rep 1
GSM5726182 Granta519-ESR2 ChIP-seq rep 2
GSM5726183 Granta519-ESR2 input DNA
BioProject PRJNA787627

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE190599_RAW.tar 2.1 Gb (http)(custom) TAR (of BIGWIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap