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Series GSE189122 Query DataSets for GSE189122
Status Public on Nov 20, 2021
Title Comparison between blue and green Spanish firs
Organism Abies pinsapo
Experiment type Expression profiling by high throughput sequencing
Summary Spanish fir (Abies pinsapo) is a relict tree that is found in southern Spain mountains. In natural conditions two phenotypes can be observed, trees with blue needles and trees with green needles. The aim of the present work is to elucidate at transcriptomic levels the possible causes of the differences between these phenotypes.
Overall design Needle samles from 6 trees were harvested for each of the considered phenotypes. The samples were isolated from field-grown adult trees in Sierra de las Nieves (Yunquera, Spain) in spring (april 2021)
Contributor(s) Ortigosa F, Lobato-Fernández C, Cañas RA, Ávila C, Cánovas FM
Citation(s) 36012612
Submission date Nov 18, 2021
Last update date Aug 31, 2022
Contact name Rafael A Cañas
Organization name Universidad de Málaga
Department Biología Molecular y Bioquímica
Lab Integrative Molecular Biology Lab
Street address Facultad de Ciencias, Campus de Teatinos
City Malaga
ZIP/Postal code E29071
Country Spain
Platforms (1)
GPL30975 Illumina NovaSeq 6000 (Abies pinsapo)
Samples (12)
GSM5694742 Blue needles Indv 1
GSM5694743 Blue needles Indv 2
GSM5694744 Blue needles Indv 3
BioProject PRJNA781601

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE189122_pinsapo_counts.txt.gz 1.3 Mb (ftp)(http) TXT
GSE189122_transcriptome_pinsapo.fasta.gz 29.6 Mb (ftp)(http) FASTA
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Processed data are available on Series record

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