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GEO accession:
Series GSE188670
Query DataSets for GSE188670
Status
Public on Jul 25, 2022
Title
Divergent clonal differentiation trajectories of T cell exhaustion
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
36289450
Submission date
Nov 12, 2021
Last update date
Feb 09, 2023
Contact name
Ansuman T Satpathy
E-mail(s)
satpathy@stanford.edu
Organization name
Stanford University
Department
Pathology
Street address
300 Pasteur Drive
City
Stanford
State/province
CA
ZIP/Postal code
94305
Country
USA
Platforms (2)
GPL21103
Illumina HiSeq 4000 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (57)
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More...
GSM5687797
Liver_Chronic_D21_CD8_TetNeg_gex
GSM5687798
Liver_Chronic_D21_CD8_TetPos_gex
GSM5687799
Lung_Chronic_D21_CD8_TetNeg_gex
GSM5687800
Lung_Chronic_D21_CD8_TetPos_gex
GSM5687801
Spleen_Acute_D21_CD8_TetNeg_gex
GSM5687802
Spleen_Acute_D21_CD8_TetPos_gex
GSM5687803
Spleen_Acute_D8_CD8_TetNeg_gex
GSM5687804
Spleen_Acute_D8_CD8_TetPos_gex
GSM5687805
Spleen_Chronic_D21_CD8_CX3CR1Neg_gex
GSM5687806
Spleen_Chronic_D21_CD8_CX3CR1Neg_Slamf6Pos_gex
GSM5687807
Spleen_Chronic_D21_CD8_CX3CR1Pos_gex
GSM5687808
Spleen_Chronic_D21_CD8_PD1Pos_gex
GSM5687809
Spleen_Chronic_D21_CD8_TetMid_gex
GSM5687810
Spleen_Chronic_D21_CD8_TetNeg_gex
GSM5687811
Spleen_Chronic_D21_CD8_TetNeg_rep1_gex
GSM5687812
Spleen_Chronic_D21_CD8_TetPos_gex
GSM5687813
Spleen_Chronic_D21_CD8_TetPos_rep1_gex
GSM5687814
Spleen_Chronic_D8_CD8_TetNeg_gex
GSM5687815
Spleen_Chronic_D8_CD8_TetPos_gex
GSM5687816
Liver_Chronic_D21_CD8_TetNeg_tcr
GSM5687817
Liver_Chronic_D21_CD8_TetPos_tcr
GSM5687818
Lung_Chronic_D21_CD8_TetNeg_tcr
GSM5687819
Lung_Chronic_D21_CD8_TetPos_tcr
GSM5687820
Spleen_Acute_D21_CD8_TetNeg_tcr
GSM5687821
Spleen_Acute_D21_CD8_TetPos_tcr
GSM5687822
Spleen_Acute_D8_CD8_TetNeg_tcr
GSM5687823
Spleen_Acute_D8_CD8_TetPos_tcr
GSM5687824
Spleen_Chronic_D21_CD8_CX3CR1Neg_Slamf6Pos_tcr
GSM5687825
Spleen_Chronic_D21_CD8_CX3CR1Neg_tcr
GSM5687826
Spleen_Chronic_D21_CD8_CX3CR1Pos_tcr
GSM5687827
Spleen_Chronic_D21_CD8_PD1Pos_tcr
GSM5687828
Spleen_Chronic_D21_CD8_TetMid_tcr
GSM5687829
Spleen_Chronic_D21_CD8_TetNeg_rep1_tcr
GSM5687830
Spleen_Chronic_D21_CD8_TetNeg_tcr
GSM5687831
Spleen_Chronic_D21_CD8_TetPos_rep1_tcr
GSM5687832
Spleen_Chronic_D21_CD8_TetPos_tcr
GSM5687833
Spleen_Chronic_D8_CD8_TetNeg_tcr
GSM5687834
Spleen_Chronic_D8_CD8_TetPos_tcr
GSM5687859
Spleen_Acute_D8_CD8_TetNeg_atac
GSM5687860
Spleen_Acute_D8_CD8_TetPos_atac
GSM5687861
Spleen_Chronic_D21_CD8_CX3CR1Neg_Slamf6Pos_atac
GSM5687862
Spleen_Chronic_D21_CD8_CX3CR1Neg_atac
GSM5687863
Spleen_Chronic_D21_CD8_CX3CR1Pos_atac
GSM5687864
Spleen_Chronic_D21_CD8_PD1Pos_rep1_atac
GSM5687865
Spleen_Chronic_D21_CD8_PD1Pos_rep2_atac
GSM5687866
Spleen_Chronic_D21_CD8_TetNeg_atac
GSM5687867
Spleen_Chronic_D21_CD8_TetPos_atac
GSM5687868
Spleen_Chronic_D8_CD8_TetNeg_atac
GSM5687869
Spleen_Chronic_D8_CD8_TetPos_atac
GSM6381662
Spleen_Chronic_D5_CD8_TetNeg_rep1_gex
GSM6381663
Spleen_Chronic_D5_CD8_TetPos_rep1_gex
GSM6381664
Spleen_Chronic_D5_CD8_TetNeg_rep2_gex
GSM6381665
Spleen_Chronic_D5_CD8_TetPos_rep2_gex
GSM6381666
Spleen_Chronic_D5_CD8_TetNeg_rep1_tcr
GSM6381667
Spleen_Chronic_D5_CD8_TetPos_rep1_tcr
GSM6381668
Spleen_Chronic_D5_CD8_TetNeg_rep2_tcr
GSM6381669
Spleen_Chronic_D5_CD8_TetPos_rep2_tcr
This SuperSeries is composed of the following SubSeries:
GSE188666
Divergent clonal differentiation trajectories of T cell exhaustion (scRNA-seq)
GSE188669
Divergent clonal differentiation trajectories of T cell exhaustion (scATAC-seq)
Relations
BioProject
PRJNA779919
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE188670_RAW.tar
13.7 Gb
(http)
(custom)
TAR (of CSV, TBI, TSV)
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