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Series GSE186484 Query DataSets for GSE186484
Status Public on Aug 11, 2022
Title Efficacious anti-CTLA-4 antibodies drive myeloid activation and TME reprograming through FcγR engagement and Type-I interferon signaling
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Despite the clinical success of checkpoints inhibitors, a significant gap still exists in our understanding of their in vivo mechanism of action, thus limiting the rational development of next generation agents. Amongst these, anti-CTLA-4 antibodies were originally developed to block inhibitory signals into activated effector T cells. However, several recent studies have demonstrated that depletion of regulatory T cells expressing high levels of CTLA-4 is critical to anti-CTLA-4 anti-tumor activity. Whereas the mechanism of action remains controversial, the emerging data support clinical development of new antibodies with enhanced killing activity. Here, using single-cell RNA sequencing in in vivo and in vitro mouse models, we sought to dissect the impact of anti-CTLA-4 blocking, Treg depleting, and FcR engaging activity on the immune responses within tumors. We observed a rapid remodeling of the innate immune landscape as early as 24-hours post-treatment. Immune remodeling was driven mainly by FcγR-engagement, and not by Treg depletion or CTLA-4 blockade, and included reduction of suppressive macrophages and activation of type-I interferon signaling. Our findings indicate that FcγR engagement and innate immune remodeling are involved in successful anti-CTLA-4 treatment, supporting further development of optimized immunotherapy agents with these features.
 
Overall design Dissecting the effect of blocking vs depleting anti-CTLA4 mAb on tumor immune microenvironment using single-cell RNA sequencing. Mice were inoculated with MCA-205 cells and treated with either Anti-CTLA-4 mIgG1 or Anti-CTLA-4 mIgG2a or untreated. Immune cells were harvested from tumors in 2 different time-points and underwent scRNAseq. We also utilized FOXP3-DTR, IFNAR KO and FCGR KO mice in different settings. Ex vivo incubation of iTregs with bone-marrow derived myeloid cells was performed.
 
Contributor(s) Yofe I, Landsberger T, Yalin A, Solomon I, Costoya C, Franz-Demane D, David E, Borenstein C, Garcia IM, Peggs KS, Quezada SA, Amit I
Citation(s) 36302895
Submission date Oct 24, 2021
Last update date Nov 09, 2022
Contact name Ido Amit
E-mail(s) ido.amit@weizmann.ac.il
Phone 972-8-9343338
Organization name Weizmann Institute of Science
Department Immunology
Street address 234 Herzl st.
City Rehovot
ZIP/Postal code 760001
Country Israel
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (368)
GSM5652791 AB711 (1.14.1-Innate)
GSM5652792 AB712 (1.14.1-Innate)
GSM5652793 AB713 (1.14.2-Innate)
Relations
BioProject PRJNA774055
SRA SRP342910

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE186484_M_metadata_r.txt.gz 2.4 Mb (ftp)(http) TXT
GSE186484_RAW.tar 324.9 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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