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Series GSE185303 Query DataSets for GSE185303
Status Public on Oct 01, 2023
Title RIP-seq of MSTR-1::FLAG and N2
Organism Caenorhabditis elegans
Experiment type Other
Summary Worms expressing 3xFLAG-tagged MSTR-1 (F22D6.2) were grown to young adult stage, crosslinked with 2% formaldehyde, and RIP-seq was performed to identify binding regions on target RNAs
 
Overall design Two biological replicates of MSTR-1::FLAG expressing (WD656) and WT (N2) control worms not expressing FLAG, and respective inputs
 
Contributor(s) Eroglu M, Derry WB
Citation(s) 39223373
Submission date Oct 04, 2021
Last update date Sep 30, 2024
Contact name Matthew Eroglu
E-mail(s) me2839@columbia.edu
Organization name Hospital for Sick Children
Department DSCB
Street address 686 Bay St
City Toronto
State/province ON
ZIP/Postal code M5G 0A4
Country Canada
 
Platforms (1)
GPL26672 Illumina NovaSeq 6000 (Caenorhabditis elegans)
Samples (8)
GSM5610385 RIP-Seq N2 input rep 1
GSM5610386 RIP-Seq N2 input rep 2
GSM5610387 RIP-Seq N2 RIP rep 1
Relations
BioProject PRJNA768477
SRA SRP339982

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE185303_N2_RIP_mean_coverage_normalized_to_input.bigwig 26.8 Mb (ftp)(http) BIGWIG
GSE185303_WD656_RIP_mean_coverage_normalized_to_input.bigwig 50.7 Mb (ftp)(http) BIGWIG
GSE185303_WD656_specific_peaks.txt.gz 30.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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