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Series GSE185283 Query DataSets for GSE185283
Status Public on Dec 31, 2022
Title Time-resolved RNA sequencing reveals distinct post-transcriptional regimes during zebrafish embryogenesis
Organisms Danio rerio; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Other
Summary We report the characterization of transcript dynamics during maternal to zygotic transition in Zebrafish (MZT) using thiol-linked alkylation for the metabolic sequencing of RNA (SLAMseq).
 
Overall design Quantification of de novo transcription during MZT
 
Contributor(s) Bhat P
Citation(s) 36757845
Submission date Oct 04, 2021
Last update date Apr 03, 2023
Contact name Stefan Ludwig Ameres
E-mail(s) stefan.ameres@imba.oeaw.ac.at
Organization name Institute of Molecular Biotechnology
Street address Dr.-Bohr-Gasse 3
City Vienna
ZIP/Postal code 1030
Country Austria
 
Platforms (2)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL18413 Illumina HiSeq 2500 (Danio rerio)
Samples (72)
GSM5610039 0.75hpf (+4sU) injection replicate 1 Inj_R1_TP1
GSM5610040 0.75hpf (+4sU) injection replicate 2 Inj_R2_TP1
GSM5610041 2hpf (+4sU) injection replicate 1 Inj_R1_TP2
Relations
BioProject PRJNA768450
SRA SRP339965

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE185283_RAW.tar 748.9 Mb (http)(custom) TAR (of BEDGRAPH, TSV, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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