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Series GSE184885 Query DataSets for GSE184885
Status Public on Sep 01, 2022
Title Allele-specific gene expression in stickleback (Gasterosteus aculeatus) spine and fins
Organism Gasterosteus aculeatus
Experiment type Expression profiling by high throughput sequencing
Other
Summary Population-specific Gasterosteus aculeatus gene expression differences in developing spines and fins as assessed by RNA-seq.
 
Overall design Two different populations of stickleback were crossed to each other to generate F1 hybrids. The spines and fins were individually dissected. RNA was extracted to investigate gene expression differences between the two populations.
 
Contributor(s) Wucherpfennig JI, Kingsley DM
Citation(s) 36050398
Submission date Sep 27, 2021
Last update date Oct 27, 2022
Contact name David M Kingsley
E-mail(s) kingsley@stanford.edu
Organization name Stanford University
Department Developmental Biology
Street address 279 Campus Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platforms (1)
GPL30674 Illumina NovaSeq 6000 (Gasterosteus aculeatus)
Samples (114)
GSM5599433 Gasterosteus_f11_dorsal_spine_1_4sp_rep1
GSM5599434 Gasterosteus_f11_dorsal_spine_2_4sp_rep1
GSM5599435 Gasterosteus_f11_dorsal_spine_3_4sp_rep1
This SubSeries is part of SuperSeries:
GSE184888 Allele-specific gene expression in stickleback spine, fins, and embryos
Relations
BioProject PRJNA766757
SRA SRP339004

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE184885_RAW.tar 589.1 Mb (http)(custom) TAR (of TAB)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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