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Series GSE18466 Query DataSets for GSE18466
Status Public on Apr 01, 2012
Title Small RNAs in the Physcomitrella dcl4 mutant
Organism Physcomitrium patens
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary To study the function of Physcomitrella DCL4, a knockout plant line was created. Small RNAs from ~10-day old protonemata were obtained and sequenced using a SOLiD 2 instrument.
 
Overall design A single library each was made from dcl4 mutant protonemata and wild-type protonemata. The dcl4 library was sequenced in four separate technical replicates. The wild-type sample was subject to a single sequencing run.
 
Contributor(s) Axtell MJ
Citation(s) 22511605
Submission date Oct 07, 2009
Last update date May 15, 2019
Contact name Michael J Axtell
E-mail(s) mja18@psu.edu
Organization name Pennsylvania State University
Department Biology
Lab Axtell
Street address 280 Mueller Lab
City University Park
State/province PA
ZIP/Postal code 16802
Country USA
 
Platforms (1)
GPL9393 AB SOLiD System 2.0 (Physcomitrella patens)
Samples (2)
GSM459911 Protonemata dcl4
GSM459912 Protonemata WT
Relations
SRA SRP002324
BioProject PRJNA118191

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE18466_RAW.tar 3.5 Mb (http)(custom) TAR (of FA)
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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