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Series GSE184532 Query DataSets for GSE184532
Status Public on Dec 30, 2021
Title Zinc finger protein Zfp335 controls thymocyte differentiation and survival through b-selection-dependent and -independent mechanisms
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary T cell development proceeds in a series of developmental stages, which is precisely orchestrated by multiple signaling and molecular networks. Here we found a zinc finger protein Zfp335 intrinsically controls DN to DP transition, as T cell-specific deficiency in Zfp335 leads to a substantial accumulation of DN3 along with reduction of DP, CD4+ and CD8+ thymocytes. This developmental blockade at DN stage results from the impaired intracellular TCRβ expression as well as increased susceptibility to apoptosis in thymocytes. Transcriptomic and ChIP-seq analyses revealed a direct regulation of transcription factors Bcl6 and Rorc by Zfp335. Importantly, enhanced expression of TCRβ and Bcl6/RorγT restores the developmental defect during DN3 to DN4 transition and improves thymocytes survival, respectively. These findings identify a critical role of Zfp335 in controlling T cell development by maintaining intracellular TCR expression-mediated β-selection and independently activating cell survival signaling.
 
Overall design Examination of DN4 thymocytes from the thymus of WT and Zfp335 deficient mice
 
Contributor(s) Zhang B, Wang X, Jiao A, Su Y
Citation(s) 35113015
Submission date Sep 21, 2021
Last update date Mar 03, 2022
Contact name 昕 王
E-mail(s) wangxin928@stu.xjtu.edu.cn
Phone +8615029001862
Organization name xi'an jiaotong university
Street address yanta west road 76
City xi'an
ZIP/Postal code 710000
Country China
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (4)
GSM5592059 DN4 thymocytes, WT1
GSM5592060 DN4 thymocytes, WT2
GSM5592061 DN4 thymocytes, KO1
Relations
BioProject PRJNA764931
SRA SRP338082

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE184532_RAW.tar 760.0 Kb (http)(custom) TAR (of TXT)
GSE184532_Raw_gene_counts_matrix.txt.gz 943.3 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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