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Series GSE183942 Query DataSets for GSE183942
Status Public on Sep 22, 2022
Title Application of annotation-agnostic RNA sequencing data analysis tools for biomarker discovery in liquid biopsy.
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We demonstrate an agnostic method to identify transcribed fragments from small Rna-Seq data using ALS patients and healthy donor’s plasma.
 
Overall design Plasma Extracellular Vesicles were isolated using Vn96 from Control donor plasma and ALS patients.
 
Contributor(s) Wajnberg G, Allain E, Beauregard A, Roy JW, Srivastava S, Saucier D, Morin PJ, Joy AP, Marrero A, O'Connell C, Ghosh A, Lewis SM, Ouellette RJ, Crapoulet N
Citation(s) 37252342
Submission date Sep 10, 2021
Last update date Aug 10, 2023
Contact name Rodney Ouellette
E-mail(s) rodneyo@canceratl.ca
Organization name ATLANTIC CANCER RESEARCH INSTITUTE
Street address 35 Providence St.
City Moncton
ZIP/Postal code E1C8X3
Country Canada
 
Platforms (1)
GPL17303 Ion Torrent Proton (Homo sapiens)
Samples (14)
GSM5574615 Healthy donor A
GSM5574616 Healthy donor B
GSM5574617 Healthy donor C
Relations
BioProject PRJNA762369
SRA SRP336587

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE183942_NormalizedCounts.txt.gz 1.1 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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