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GEO accession:
Series GSE183806
Query DataSets for GSE183806
Status
Public on Sep 09, 2021
Title
Chromatin architecture of B cell development during the humoral immune response
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
34556886
Submission date
Sep 09, 2021
Last update date
Oct 14, 2023
Contact name
Ashley Stephen Doane
E-mail(s)
asd2007@med.cornell.edu, ashley.doane@gmail.com
Organization name
Weill Cornell Medicine
Street address
1300 York Ave
City
New York
State/province
NY
ZIP/Postal code
10021
Country
USA
Platforms (5)
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GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL17021
Illumina HiSeq 2500 (Mus musculus)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL20301
Illumina HiSeq 4000 (Homo sapiens)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (107)
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GSM4826470
NB_4
GSM4826471
PC_3
GSM4826472
GCB_1
GSM4826473
NB_5
GSM4826474
PC_4
GSM4826475
GCB_2
GSM4826476
NB_6
GSM4826477
GCB_CB_1
GSM4826478
GCB_CB_2
GSM4826479
GCB_CB_3
GSM4826480
GCB_CC_1
GSM4826481
GCB_CC_2
GSM4826482
GCB_CC_3
GSM4826483
MB_1
GSM4826484
MB_2
GSM4826485
NB_1
GSM4826486
PC_1
GSM4826487
GCB_CB_4
GSM4826488
GCB_CB_5
GSM4826489
MB_3
GSM4826490
PC_2
GSM4826491
GCB_CB_6
GSM4826492
NB_2
GSM4826493
GCB_CB_7
GSM4826494
NB_3
GSM5570005
SUDHL4_OCABi_rep1
GSM5570006
SUDHL4_OCABi_rep2
GSM5570007
OCI-Ly7_control_rep1
GSM5570008
OCI-Ly7_control_rep2
GSM5570009
SUDHL4_control_rep1
GSM5570010
SUDHL4_control_rep2
GSM5570011
OCI-Ly7_OCABi_rep1
GSM5570012
OCI-Ly7_OCABi_rep2
GSM5570013
OCI-Ly7_control_rep3
GSM5570014
OCI-Ly7_OCABi_rep3
GSM5570015
OCI-Ly7_OCABi_rep4
GSM5570016
OCI-Ly7_OCABi_rep5
GSM5570017
OCI-Ly7_OCABi_rep6
GSM5570018
OCI-Ly7_control_rep7
GSM5570019
OCI-Ly7_control_rep8
GSM5570020
OCI-Ly7_control_rep9
GSM5570021
OCI-Ly7_OCT2i_rep3
GSM5570022
OCI-Ly7_OCT2i_rep1
GSM5570023
OCI-Ly7_OCT2i_rep2
GSM5570024
OCI-Ly7_OCT2i_rep4
GSM5570025
OCI-Ly7_OCT2i_rep5
GSM5570026
OCI-Ly7_OCT2i_rep6
GSM5570027
OCI-Ly7_OCT2i_rep7
GSM5570028
OCI-Ly7_OCT2i_rep8
GSM5570029
SUDHL4_OCT2i_rep1
GSM5570030
SUDHL4_OCT2i_rep2
GSM5570037
GCB_OCT2
GSM5570038
GCB_OCAB
GSM5570039
NB_OCT2
GSM5570040
GCB_Input
GSM5570041
NB_Input
GSM5570042
OCI-Ly7_OCT2
GSM5570043
OCI-Ly7_OCAB
GSM5570044
OCI-Ly7_Input
GSM5570045
OCI-Ly7_control_OCT2_rep1
GSM5570046
OCI-Ly7_control_OCT2_rep2
GSM5570047
OCI-Ly7_OCABi_OCT2_rep1
GSM5570048
OCI-Ly7_OCABi_OCT2_rep2
GSM5570049
OCI-Ly7_control_INPUT_rep1
GSM5570050
OCI-Ly7_control_INPUT_rep2
GSM5570051
OCI-Ly7_OCABi_INPUT_rep1
GSM5570052
OCI-Ly7_OCABi_INPUT_rep2
GSM5571212
H3K27ac_HiChIP_OCI-Ly7_control_rep1
GSM5571213
H3K27ac_HiChIP_OCI-Ly7_control_rep2
GSM5571214
H3K27ac_HiChIP_OCI-Ly7_control_rep3
GSM5571215
H3K27ac_HiChIP_OCI-Ly7_OCABi_rep1
GSM5571216
H3K27ac_HiChIP_OCI-Ly7_OCABi_rep2
GSM5571590
SUDH4_OCT2i_rep1 [ATAC-seq]
GSM5571591
OCI-Ly7_OCT2i_rep2 [ATAC-seq]
GSM5571592
SUDH4_OCABi_rep1 [ATAC-seq]
GSM5571593
SUDH4_OCT2i_rep2 [ATAC-seq]
GSM5571594
OCI-Ly7_Control_rep1 [ATAC-seq]
GSM5571595
SUDH4_OCABi_rep2 [ATAC-seq]
GSM5571596
OCI-Ly7_Control_rep2 [ATAC-seq]
GSM5571597
OCI-Ly7_OCABi_rep2 [ATAC-seq]
GSM5571598
OCI-Ly7_OCABi_rep4 [ATAC-seq]
GSM5571599
OCI-Ly7_OCABi_rep1 [ATAC-seq]
GSM5571600
OCI-Ly7_Control_rep3 [ATAC-seq]
GSM5571601
SUDH4_Control_rep2 [ATAC-seq]
GSM5571602
SUDH4_Control_rep1 [ATAC-seq]
GSM5571603
OCI-Ly7_OCABi_rep3 [ATAC-seq]
GSM5571604
OCI-Ly7_OCT2i_rep1 [ATAC-seq]
GSM7840426
GC B cell rep 1
GSM7840427
GC B cell rep 2
GSM7840428
GC B cell rep 3
GSM7840429
GC B cell rep 4
GSM7840430
GC B cell rep 5
GSM7840431
Naïve B cell rep 1
GSM7840432
Naïve B cell rep 2
GSM7840433
Naïve B cell rep 3
GSM7840434
Naïve B cell rep 4
GSM7840435
Naïve B cell rep 5
GSM7840436
B Cells Control 1
GSM7840437
B Cells Control 2
GSM7840438
B Cells Control 3
GSM7840439
B Cells Control 4
GSM7840440
B Cells Control 5
GSM7840441
B Cells Ocab 1
GSM7840442
B Cells Ocab 2
GSM7840443
B Cells Ocab 3
GSM7840444
B Cells Ocab 4
GSM7840445
B Cells Ocab 5
This SuperSeries is composed of the following SubSeries:
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GSE159314
ATAC-seq of human tonsillar B-cell populations
GSE183741
RNA-seq of germinal center B cell-derived cell lines after POU2F2 or POU2AF1 knockdown
GSE183743
ChIP-seq for OCT2 and OCA-B in human primary naïve and germinal center B cells and germinal center B cell-derived cell lines following POU2AF1 knock down
GSE183797
H3K27ac HiChIP of germinal center B cell-derived cells after POU2AF1 knockdown
GSE183803
ATAC-seq of germinal center B cell-derived cell lines after POU2F2 or POU2AF1 knockdown
GSE245298
ATAC-seq of murine splenic B cell populations
Relations
BioProject
PRJNA762037
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE183806_RAW.tar
37.2 Gb
(http)
(custom)
TAR (of BIGWIG, BW, MCOOL, NARROWPEAK, SF)
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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