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Series GSE183673 Query DataSets for GSE183673
Status Public on Jun 30, 2022
Title Pancreas agenesis mutations disrupt a lead enhancer controlling a developmental enhancer cluster
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary Single cell RNA-Seq and ATAC-Seq in mouse E10.5 multipotent pancreatic progenitors (MPCs) and single cell ATAC-Seq of mouse E13.5 pancreas.
 
Overall design scRNA-Seq and scATAC-Seq profiles (10X Genomics) of a pool of Ptf1a+/+ and Ptf1aenh/enh MPCs manually dissected from E10.5 mouse embryos (between 5-9 embryos/dataset) and scATAC-Seq dataset of E13.5 pancreas from a pool of Ptf1a+/+ and Ptf1aenh/enh embryos (n=6 embryos/dataset).
 
Contributor(s) Miguel-Escalada I, Elek A, Ferrer J
Citation(s) 35998583
Submission date Sep 08, 2021
Last update date Aug 24, 2022
Contact name Irene Miguel-Escalada
E-mail(s) irene.miguelescalada@crg.eu
Organization name CRG
Street address Dr Aiguader 88
City BArcelona
ZIP/Postal code 08003
Country Spain
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (6)
GSM5567400 mouse E10.5 MPCs WT 1
GSM5567401 mouse E10.5 MPCs KO 1
GSM5567402 mouse E10.5 MPCs WT 2
This SubSeries is part of SuperSeries:
GSE183674 Pancreas agenesis mutations disrupt a lead enhancer controlling a developmental enhancer cluster
Relations
BioProject PRJNA761668
SRA SRP336156

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE183673_scATAC_e10_cells.txt.gz 9.1 Kb (ftp)(http) TXT
GSE183673_scATAC_e10_genes.txt.gz 28.4 Kb (ftp)(http) TXT
GSE183673_scATAC_e10_matrix.mtx.gz 33.2 Mb (ftp)(http) MTX
GSE183673_scATAC_e13_cells.txt.gz 17.4 Kb (ftp)(http) TXT
GSE183673_scATAC_e13_genes.txt.gz 28.4 Kb (ftp)(http) TXT
GSE183673_scATAC_e13_matrix.mtx.gz 51.6 Mb (ftp)(http) MTX
GSE183673_scRNA_e10_cells.txt.gz 10.1 Kb (ftp)(http) TXT
GSE183673_scRNA_e10_genes.txt.gz 111.0 Kb (ftp)(http) TXT
GSE183673_scRNA_e10_matrix.mtx.gz 9.5 Mb (ftp)(http) MTX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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