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Status |
Public on Jun 30, 2022 |
Title |
Pancreas agenesis mutations disrupt a lead enhancer controlling a developmental enhancer cluster |
Organism |
Mus musculus |
Experiment type |
Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing
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Summary |
Single cell RNA-Seq and ATAC-Seq in mouse E10.5 multipotent pancreatic progenitors (MPCs) and single cell ATAC-Seq of mouse E13.5 pancreas.
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Overall design |
scRNA-Seq and scATAC-Seq profiles (10X Genomics) of a pool of Ptf1a+/+ and Ptf1aenh/enh MPCs manually dissected from E10.5 mouse embryos (between 5-9 embryos/dataset) and scATAC-Seq dataset of E13.5 pancreas from a pool of Ptf1a+/+ and Ptf1aenh/enh embryos (n=6 embryos/dataset).
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Contributor(s) |
Miguel-Escalada I, Elek A, Ferrer J |
Citation(s) |
35998583 |
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Submission date |
Sep 08, 2021 |
Last update date |
Aug 24, 2022 |
Contact name |
Irene Miguel-Escalada |
E-mail(s) |
irene.miguelescalada@crg.eu
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Organization name |
CRG
|
Street address |
Dr Aiguader 88
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City |
BArcelona |
ZIP/Postal code |
08003 |
Country |
Spain |
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Platforms (1) |
GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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Samples (6)
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This SubSeries is part of SuperSeries: |
GSE183674 |
Pancreas agenesis mutations disrupt a lead enhancer controlling a developmental enhancer cluster |
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Relations |
BioProject |
PRJNA761668 |
SRA |
SRP336156 |
Supplementary file |
Size |
Download |
File type/resource |
GSE183673_scATAC_e10_cells.txt.gz |
9.1 Kb |
(ftp)(http) |
TXT |
GSE183673_scATAC_e10_genes.txt.gz |
28.4 Kb |
(ftp)(http) |
TXT |
GSE183673_scATAC_e10_matrix.mtx.gz |
33.2 Mb |
(ftp)(http) |
MTX |
GSE183673_scATAC_e13_cells.txt.gz |
17.4 Kb |
(ftp)(http) |
TXT |
GSE183673_scATAC_e13_genes.txt.gz |
28.4 Kb |
(ftp)(http) |
TXT |
GSE183673_scATAC_e13_matrix.mtx.gz |
51.6 Mb |
(ftp)(http) |
MTX |
GSE183673_scRNA_e10_cells.txt.gz |
10.1 Kb |
(ftp)(http) |
TXT |
GSE183673_scRNA_e10_genes.txt.gz |
111.0 Kb |
(ftp)(http) |
TXT |
GSE183673_scRNA_e10_matrix.mtx.gz |
9.5 Mb |
(ftp)(http) |
MTX |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |