|
| Status |
Public on Apr 30, 2023 |
| Title |
Characterization of active chromatin marks by CUT&Tag after FOXD3 depletion |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We performed CUT&Tag of inducible FOXD3 KO cells with or without cell cycle phase sorting to determine impact of FOXD3 loss of active chromatin marks.
|
| |
|
| Overall design |
FOXD3 depletion was induced by tamoxifen (4HT) addition and compared to solvent treated cells.
|
| |
|
| Contributor(s) |
Gökbuget D, Boileau RM, Blelloch R |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Sep 03, 2021 |
| Last update date |
Apr 30, 2023 |
| Contact name |
Robert Blelloch |
| Organization name |
UCSF
|
| Department |
Urology
|
| Street address |
35 Medical Center Way
|
| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94143 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
| GPL28457 |
DNBSEQ-G400 (Mus musculus) |
|
| Samples (28)
|
|
| This SubSeries is part of SuperSeries: |
| GSE183420 |
Transcriptional repressor FOXD3 safeguards genome integrity in embryonic stem cells |
|
| Relations |
| BioProject |
PRJNA760539 |
| SRA |
SRP335621 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE183419_G1_EtOH.mRp.clN.bigWig |
12.5 Mb |
(ftp)(http) |
BIGWIG |
| GSE183419_G1_TAM.mRp.clN.bigWig |
13.4 Mb |
(ftp)(http) |
BIGWIG |
| GSE183419_G2_EtOH.mRp.clN.bigWig |
10.7 Mb |
(ftp)(http) |
BIGWIG |
| GSE183419_G2_TAM.mRp.clN.bigWig |
11.8 Mb |
(ftp)(http) |
BIGWIG |
| GSE183419_S_EtOH.mRp.clN.bigWig |
12.9 Mb |
(ftp)(http) |
BIGWIG |
| GSE183419_S_TAM.mRp.clN.bigWig |
13.5 Mb |
(ftp)(http) |
BIGWIG |
| GSE183419_h2bk120ac_trp_async_cpm_atac.tab.gz |
2.7 Mb |
(ftp)(http) |
TAB |
| GSE183419_h3k27ac_async_cpm_atac.tab.gz |
2.2 Mb |
(ftp)(http) |
TAB |
| GSE183419_igg_cpm_atac.tab.gz |
2.2 Mb |
(ftp)(http) |
TAB |
| GSE183419_igg_cpm_tss_5kb.tab.gz |
1.1 Mb |
(ftp)(http) |
TAB |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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