GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE183187 Query DataSets for GSE183187
Status Public on Nov 01, 2022
Title Total RNA-seq from Patient-Derived Xenograft models of Breast Cancer developed at Baylor College of Medicine
Organisms Homo sapiens; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary This study is a repository for all RNAseq data obtained from High Throuput Seqeuncing of Patient Derived Xenograft models of Breast Cancer studied at the Baylor College of Medicine Breast Center.
Overall design Total RNA extracted from untreated xenograft tissue and sequenced using Illumina HiSeq/NovaSeq.
Contributor(s) Lewis MT, Hilsenbeck SG, Welm AL, Welm BE, Osbourne CK, Milosavljevic A, Ellis MJ, Dobrolecki LE, Lei JT, Petrosyan V, Rajaram Srinivasan R, Huang C, Vasaikar S, Sallas C, Rimawi MF, Saltzman AB, Malovannaya A, Wulf G, Kraushaar DC, Wang T, Chen X, Echevarria GV, Anurag M, Zhang B
Citation(s) 36088362
Submission date Sep 01, 2021
Last update date Jan 31, 2023
Contact name Michael T Lewis
Organization name Baylor College of Medicine
Department Breast Center
Lab Lewis Lab
Street address 1 Baylor Plaza N1210
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
Platforms (4)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL16512 Illumina HiSeq 2000 (Homo sapiens; Mus musculus)
GPL22245 Illumina HiSeq 2500 (Homo sapiens; Mus musculus)
Samples (153)
GSM5552631 Patient Derived Xenograft model BCM-0002
GSM5552632 Patient Derived Xenograft model BCM-0044
GSM5552633 Patient Derived Xenograft model BCM-0046
BioProject PRJNA759581
SRA SRP335205

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE183187_BCM_PDX_RNAseq_RSEM_ExpectedCounts.txt.gz 3.7 Mb (ftp)(http) TXT
GSE183187_RAW.tar 249.4 Mb (http)(custom) TAR (of RESULTS, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap