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Status |
Public on Aug 15, 2021 |
Title |
A chromatin immunoprecipitation database for prokarytic organisms [fur] |
Organisms |
Escherichia coli; Klebsiella pneumoniae; Shigella flexneri; Yersinia pseudotuberculosis; Salmonella enterica |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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Summary |
Bacterial transcription factors (TFs) regulate gene expression to adapt to changing environments; when combined, the TF’s regulatory actions comprise transcriptional regulatory networks (TRNs). The chromatin immunoprecipitation (ChIP) assay is the major contemporary method for mapping in vivo protein-DNA interactions in the genome. It enables the genome-wide study of transcription factor binding sites (TFBSs) and gene regulation. Although rapidly accumulating publicly-available ChIP data are a valuable resource for the study of gene regulation, there are no full datasets of ferric uptake regulator (Fur) across gram-negative bacteria. Here, we present the genome-wide binding for Fur in multi-species.
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Overall design |
Identification of genome-wide Fur bindings for transcription factors in multi-species using ChIP-exo technology
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Contributor(s) |
Gao Y, Palsson B |
Citation missing |
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Submission date |
Aug 10, 2021 |
Last update date |
Aug 20, 2021 |
Contact name |
Ye Gao |
E-mail(s) |
yeg002@ucsd.edu
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Organization name |
UCSD
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Street address |
9500 Gilman Dr.
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City |
La Jolla |
ZIP/Postal code |
92093 |
Country |
USA |
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Platforms (5)
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GPL18133 |
Illumina HiSeq 2500 (Escherichia coli) |
GPL25164 |
Illumina HiSeq 2500 (Klebsiella pneumoniae) |
GPL25905 |
Illumina HiSeq 2500 (Shigella flexneri) |
GPL27774 |
Illumina HiSeq 2500 (Yersinia pseudotuberculosis) |
GPL29062 |
Illumina HiSeq 2500 (Salmonella enterica) |
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Samples (14)
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This SubSeries is part of SuperSeries: |
GSE182079 |
A chromatin immunoprecipitation database for prokarytic organisms |
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Relations |
BioProject |
PRJNA753324 |
SRA |
SRP331859 |