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GEO accession:
Series GSE181499
Query DataSets for GSE181499
Status
Public on Aug 31, 2022
Title
ZNF384 fusion oncoproteins drive lineage aberrancy in acute leukemia
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
35247902
Submission date
Aug 04, 2021
Last update date
Sep 01, 2022
Contact name
QINGSONG GAO
E-mail(s)
gaoqs313@gmail.com
Organization name
ST JUDE CHILDREN'S RESEARCH HOSPITAL
Street address
262 DANNY THOMAS PLACE
City
MEMPHIS
State/province
Tennessee
ZIP/Postal code
38105
Country
USA
Platforms (2)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (81)
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GSM5503571
scRNA-seq of HEB55
GSM5503572
scRNA-seq of HEB57
GSM5503573
scRNA-seq of HEB59
GSM5503583
ZNF384 HiCHIP H3K27Ac Replicate 1
GSM5503584
ZNF384 HiCHIP H3K27Ac Replicate 2
GSM5503585
TAF15-ZNF384 HiCHIP H3K27Ac Replicate 1
GSM5503586
TAF15-ZNF384 HiCHIP H3K27Ac Replicate 2
GSM5503587
TCF3-ZNF384 HiCHIP H3K27Ac Replicate 1
GSM5503588
TCF3-ZNF384 HiCHIP H3K27Ac Replicate 2
GSM5504643
RNAseq of 4628_SPL_KD032
GSM5504644
RNAseq of 4624_SPL_KD032
GSM5504645
RNAseq of 4622_SPL_KD032
GSM5504646
RNAseq of 4626_SPL_KD032
GSM5504647
RNAseq of 4630_SPL_KD032
GSM5504648
RNAseq of 4324_SPL_CB_XENO
GSM5504649
RNAseq of CTRL_BM_KD023
GSM5504650
RNAseq of SJMMAML066076_O1-179_SPL_KD023
GSM5504651
RNAseq of SJMMAML066077_O1-181_SPL_KD023
GSM5504652
RNAseq of 182_BM_KD023
GSM5504653
RNAseq of 174_BM_KD023
GSM5504654
RNAseq of 173_BM_KD023
GSM5504655
RNAseq of SJMMAML066078_O1-171_SPL_KD023
GSM5504656
RNAseq of SJMMAML066079_O1-172_SPL_KD023
GSM5504657
RNAseq of SJMMAML066080_O1-1751_SPL_KD023
GSM5504658
RNAseq of SJMMAML066087_O1-UT_BM_KD018
GSM5504659
RNAseq of SJMMAML066070_O1-1718_SPL_KD018
GSM5504660
RNAseq of SJMMAML066071_O1-1723_SPL_KD019
GSM5504661
RNAseq of SJMMAML066072_O1-3871_SPL_KD020
GSM5504662
RNAseq of SJMMAML066073_O1-996_SPL_KD021
GSM5504663
RNAseq of SJMMAML066086_O1-UT_BM_KD019
GSM5504664
RNAseq of 984_SPL_KD019
GSM5504665
RNAseq of SJMMAML066067_O1-66_SPL_KD022
GSM5504666
RNAseq of SJMMAML066068_O1-68_SPL_KD022
GSM5504667
RNAseq of SJMMAML066069_O1-75_SPL_KD022
GSM5504668
RNAseq of SJMMAML066074_O1-62_SPL_KD022
GSM5504669
RNAseq of 65_BM_KD022
GSM5504670
RNAseq of 61_BM_KD022
GSM5504671
RNAseq of SJMMAML066083_O1-2710_SPL_KD025
GSM5504672
RNAseq of SJMMAML066084_O1-523_SPL_KD025
GSM5504673
RNAseq of 522_BM_KD025
GSM5504674
RNAseq of 82_BM_KD025
GSM5504675
RNAseq of SJMMAML066085_O1-2714_SPL_KD025
GSM5504676
RNAseq of 515_SPL_KD025
GSM5504677
RNAseq of SJMMAML066088_O1-UT_BM_KD029
GSM5504678
RNAseq of 67_SPL_KD029
GSM5504679
RNAseq of CTRL_BM_KD013
GSM5504680
RNAseq of CTRL_BM_KD014
GSM5508178
TCF3-ZNF384 -e8 INPUT Replicate 1
GSM5508179
TCF3-ZNF384 -e8 HA Replicate 1
GSM5508180
TCF3-ZNF384 +e8 INPUT Replicate 1
GSM5508181
TCF3-ZNF384 +e8 HA Replicate 1
GSM5508182
TCF3-ZNF384 -e8 INPUT Replicate 2
GSM5508183
TCF3-ZNF384 -e8 HA Replicate 2
GSM5508184
TCF3-ZNF384 +e8 INPUT Replicate 2
GSM5508185
TCF3-ZNF384 +e8 HA Replicate 2
GSM5508186
TCF3-ZNF384 -e8 INPUT Replicate 3
GSM5508187
TCF3-ZNF384 -e8 HA Replicate 3
GSM5508188
TCF3-ZNF384 +e8 INPUT Replicate 3
GSM5508189
TCF3-ZNF384 +e8 HA Replicate 3
GSM5508190
TCF3-ZNF384 -e8 INPUT Replicate 4
GSM5508191
TCF3-ZNF384 -e8 HA Replicate 4
GSM5508192
TCF3-ZNF384 +e8 INPUT Replicate 4
GSM5508193
TCF3-ZNF384 +e8 HA Replicate 4
GSM5508194
ZNF384 H3K27Ac Replicate 1
GSM5508195
TAF15-ZNF384 H3K27Ac Replicate 1
GSM5508196
TCF3-ZNF384 H3K27Ac Replicate 1
GSM5508197
ZNF384 INPUT Replicate 1
GSM5508198
TAF15-ZNF384 INPUT Replicate 1
GSM5508199
TCF3-ZNF384 INPUT Replicate 1
GSM5508200
TAF15-ZNF384 H3K27Ac Replicate 2
GSM5508201
TCF3-ZNF384 H3K27Ac Replicate 2
GSM5508202
TAF15-ZNF384 INPUT Replicate 2
GSM5508203
TCF3-ZNF384 INPUT Replicate 2
GSM5737695
RNA-seq of population CD33+CD19+ of PDX sample SJBALL004031
GSM5737696
RNA-seq of population CD33+CD19- of PDX sample SJBALL004031
GSM5737697
RNA-seq of population CD33-CD19+ of PDX sample SJBALL004031
GSM5737698
RNA-seq of population CD33-CD19- of PDX sample SJBALL004031
GSM5737699
RNA-seq of population CD33+CD19+ of PDX sample SJMPAL046472
GSM5737700
RNA-seq of population CD33+CD19- of PDX sample SJMPAL046472
GSM5737701
RNA-seq of population CD33+CD19+ of JIH-5 cells
GSM5737702
RNA-seq of population CD33-CD19+ of JIH-5 cells
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE181495
ZNF384 fusion oncoproteins drive lineage aberrancy in acute leukemia [scRNA-Seq]
GSE181498
ZNF384 fusion oncoproteins drive lineage aberrancy in acute leukemia [HiChIP]
GSE181532
ZNF384 fusion oncoproteins drive lineage aberrancy in acute leukemia [RNA-Seq]
GSE181617
ZNF384 fusion oncoproteins drive lineage aberrancy in acute leukemia [ChIP-seq]
GSE191028
ZNF384 fusion oncoproteins drive lineage aberrancy in acute leukemia [RNA-seq 2]
Relations
BioProject
PRJNA752213
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE181499_RAW.tar
3.9 Gb
(http)
(custom)
TAR (of BW, MTX, NARROWPEAK, TSV, TXT)
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