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Series GSE180935 Query DataSets for GSE180935
Status Public on Jul 30, 2021
Title Aire regulates chromatin looping by evicting CTCF from domain boundaries and favoring accumulation of cohesin on super-enhancers [RNA-seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary RNA-seq analysis of Aire+/+ and Aire-/- mTECs with or without deletion of STAG2 (SA-2).
 
Overall design CD45-Ly51loMHCIIhi mTECs were FACS sorted and low input RNA-seq was perfomed.
 
Contributor(s) Mathis D, Benoist C
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Submission date Jul 27, 2021
Last update date Jul 30, 2021
Contact name CBDM Lab
E-mail(s) cbdm@hms.harvard.edu
Phone 617-432-7747
Organization name Harvard Medical School
Department Microbiology and Immunobiology
Lab CBDM
Street address 77 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (13)
GSM5478660 STAG2(fl/fl)_#1 [RNA-seq]
GSM5478661 STAG2(fl/fl)_#2 [RNA-seq]
GSM5478662 STAG2(fl/fl)_#3 [RNA-seq]
This SubSeries is part of SuperSeries:
GSE180937 Aire regulates chromatin looping by evicting CTCF from domain boundaries and favoring accumulation of cohesin on super-enhancers
Relations
BioProject PRJNA750246
SRA SRP330312

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE180935_Gene_count_table.tsv.gz 590.7 Kb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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