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Series GSE180734 Query DataSets for GSE180734
Status Public on Jul 26, 2021
Title The RAG1 N-terminal region regulates the efficiency and pathways of synapsis for V(D)J recombination
Organism Mus musculus
Experiment type Other
Summary Studies of novel RAG1 N-terminal region mutants reveal a role for the first 215 amino acids in establishing the balance between short- and long-range V(D)J recombination and a distinct role for RAG1 ubiquitin ligase activity in promoting efficient recombination and lymphocyte development.
 
Overall design We generated mice in which RAG1 lacks ubiquitin ligase activity (P326G), the major site of autoubiquitination (K233R), or its first 215 residues (d215). We analyzed the Igh repertoire of these mice in bone marrow (B220+ IgM-) and splenic (B220+) B cells using HTGTS-Rep-seq with Jh1 and Jh3 as baits.
 
Contributor(s) Beilinson HA, Yadavalli AD, Xiao J, Corbett E, Saribasak H, Schatz DG
Citation(s) 34402853
Submission date Jul 23, 2021
Last update date Oct 25, 2021
Contact name Helen Alexander Beilinson
E-mail(s) beilinsonh@uchicago.edu, helen.beilinson@yale.edu
Organization name Yale University
Department Immunobiology
Street address 300 Cedar Street
City New Haven
State/province CT
ZIP/Postal code 06520
Country USA
 
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (54)
GSM5469207 Spleen_1_WT_JH1
GSM5469208 Spleen_1_d215_JH1
GSM5469209 Spleen_1_R1c_JH1
Relations
BioProject PRJNA749296
SRA SRP329633

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE180734_Beilinson_et_al_HTGTS_Rep_seq_BM1.xlsx 29.5 Kb (ftp)(http) XLSX
GSE180734_Beilinson_et_al_HTGTS_Rep_seq_BM2.xlsx 36.1 Kb (ftp)(http) XLSX
GSE180734_Beilinson_et_al_HTGTS_Rep_seq_BM3.xlsx 21.5 Kb (ftp)(http) XLSX
GSE180734_Beilinson_et_al_HTGTS_Rep_seq_Spleen1.xlsx 30.6 Kb (ftp)(http) XLSX
GSE180734_Beilinson_et_al_HTGTS_Rep_seq_Spleen2.xlsx 30.1 Kb (ftp)(http) XLSX
GSE180734_Beilinson_et_al_HTGTS_Rep_seq_Spleen3.xlsx 23.2 Kb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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