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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 25, 2009 |
| Title |
Genome-Wide Dynamics of Replication Timing Revealed by In Vitro Models of Mouse Embryogenesis |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by array
Genome variation profiling by genome tiling array
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
GSE17980 (Expression): 8 cell lines, with a total of 14 individual replicates (i.e. 6 in duplicates, 2 in single replicates)
GSE17983 (WG_CGH; Replication Timing): 22 cell lines, with a total of 36 individual replicates (i.e. 14 in duplicates, 8 in single replicates)
GSE45716: 3 cell types, with a total of 6 individual replicates
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| Citation(s) |
19952138 |
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| Submission date |
Sep 08, 2009 |
| Last update date |
Aug 23, 2016 |
| Contact name |
David M. Gilbert |
| E-mail(s) |
gilbert@bio.fsu.edu
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| Phone |
8506457583
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| Organization name |
Florida State University
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| Street address |
319 Stadium Drive
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| City |
Tallahassee |
| State/province |
Florida |
| ZIP/Postal code |
32306-4295 |
| Country |
USA |
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| Platforms (4)
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| GPL9154 |
NimbleGen Mouse 60-mer Expression Array 42.5K |
| GPL9156 |
FSU NimbleGen Mouse 385K Whole Genome Tiling |
| GPL11620 |
NimbleGen Mouse 385kb array [2006-07-26_MM8_WG_CGH] |
| GPL15225 |
NimbleGen Mouse CGH 3x720K Whole-Genome Tiling Array [100718_MM9_WG_CGH] |
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| Samples (42)
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| GSM450243 |
D3 EBM3, replicate 2 |
| GSM450244 |
D3 EBM6, replicate 1 |
| GSM450245 |
D3 EBM6, replicate 2 |
| GSM450246 |
D3 NPC/EBM9, replicate 1 |
| GSM450247 |
D3 NPC/EBM9, replicate 2 |
| GSM450248 |
D3 EBM6R, replicate 1 |
| GSM450249 |
D3 EBM6R, replicate 2 |
| GSM450250 |
EpiSC7, replicate 1 |
| GSM450251 |
EpiSC7, replicate 2 |
| GSM450252 |
Gsc+Sox17-Mesoderm |
| GSM450253 |
Gsc+Sox17+Endoderm |
| GSM450272 |
Replication timing of 46C ESC |
| GSM450273 |
Replication timing of D3 ESC |
| GSM450274 |
Replication timing of TT2 ESC |
| GSM450275 |
Replication timing of iPSC |
| GSM450276 |
Replication timing of iPSC, 1D4 |
| GSM450277 |
Replication timing of iPSC, 2D4 |
| GSM450278 |
Replication timing of D3 EPL |
| GSM450279 |
Replication timing of D3 EBM3 |
| GSM450280 |
Replication timing of EpiSC5, clone O |
| GSM450281 |
Replication timing of EpiSC7 |
| GSM450282 |
Replication timing of D3 EBM6 |
| GSM450283 |
Replication timing of 46C NPC/ASd6 |
| GSM450284 |
Replication timing of TT2 NPC/ASd9 |
| GSM450285 |
Replication timing of D3 NPC/EBM9 |
| GSM450286 |
Replication timing of Gsc+Sox17-Mesoderm |
| GSM450287 |
Replication timing of Gsc+Sox17+Endoderm |
| GSM450288 |
Replication timing of partially-reprogrammed iPSC, 1A2 |
| GSM450289 |
Replication timing of partially-reprogrammed iPSC, 1B3 |
| GSM450290 |
Replication timing of partially-reprogrammed iPSC, V3 |
| GSM450291 |
Replication timing of MEF (female) |
| GSM450292 |
Replication timing of MEF (male) |
| GSM450293 |
Replication timing of J185a myoblast |
| GSM1112425 |
Replication timing of L1210 cell line, replicate 1 |
| GSM1112426 |
Replication timing of L1210 cell line, replicate 2 |
| GSM1113245 |
Replication timing of CH12 cell line, replicate 1 |
| GSM1113246 |
Replication timing of CH12 cell line, replicate 2 |
| GSM1113247 |
Replication timing of MEL cell line, replicate 1 |
| GSM1113248 |
Replication timing of MEL cell line, replicate 2 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE17980 |
Genome-Wide Dynamics of Replication Timing Revealed by In Vitro Models of Mouse Embryogenesis (Expression) |
| GSE17983 |
Replication Timing Reveal An Epigenetic Commitment To Differentiation Prior To Germ Layer Specification (WG_CGH, RT) |
| GSE45716 |
Replication timing profiling by Repli-chip in Mus musculus |
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| Relations |
| BioProject |
PRJNA119253 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE18019_RAW.tar |
795.2 Mb |
(http)(custom) |
TAR (of PAIR) |
| Raw data provided as supplementary file |
| Processed data included within Sample table |
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