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Series GSE179677 Query DataSets for GSE179677
Status Public on Sep 29, 2021
Title Small RNA sequencing of the 8 to 30-nucleotide window from various samples
Organisms Arabidopsis thaliana; Schizosaccharomyces pombe; Saccharomyces cerevisiae; Drosophila melanogaster; Homo sapiens; Mus musculus
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary RNA-sequencing (RNA-Seq) protocols and bioinformatic pipelines are designed to streamline downstream analyses on sequences believed to be the most important. Here, we have challenged this dogma by preserving ribosomal RNA (rRNA) in our samples and by lowering the minimal RNA size window of our small RNA-Seq analyses to 8 nt
 
Overall design Analyzing the content of the RNA size window between 8 and 30 nt of 13 different biological samples from 6 different organisms by small RNA-Seq.
 
Contributor(s) Provost P, Beauparlant CJ, Lambert M, Benmoussa A
Citation(s) 34575920
https://doi.org/10.3390/ijms22189757
Submission date Jul 07, 2021
Last update date Oct 06, 2021
Contact name Tarik Moroy
Organization name IRCM
Street address 110 Pine Ave W, Montreal
City Montréal
ZIP/Postal code H2W 1R7
Country Canada
 
Platforms (6)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL13222 Illumina HiSeq 2000 (Arabidopsis thaliana)
Samples (11)
GSM5426177 Human PMN
GSM5426178 HUVEC
GSM5426179 HEK393 cells
Relations
BioProject PRJNA744531
SRA SRP327393

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE179677_RAW.tar 18.3 Mb (http)(custom) TAR (of FA)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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