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GEO accession:
Series GSE179275
Query DataSets for GSE179275
Status
Public on Nov 30, 2021
Title
AAV-delivered suppressor tRNA overcomes a nonsense mutation in mice
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
35322228
Submission date
Jul 01, 2021
Last update date
Apr 22, 2022
Contact name
Yue Zhang
E-mail(s)
6leensky@gmail.com
Organization name
Umass medical school
Street address
GeneTherapyCenter, 368 Plantation st
City
Worcester
State/province
Massachusetts
ZIP/Postal code
01605
Country
USA
Platforms (5)
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GPL16417
Illumina MiSeq (Mus musculus)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (58)
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GSM5412780
PCR_NGS-Heart-No_treat-1
GSM5412781
PCR_NGS-Heart-No_treat-2
GSM5412782
PCR_NGS-Heart-No_treat-3
GSM5412783
PCR_NGS-Heart-sup_tRNA_treat-1
GSM5412784
PCR_NGS-Heart-sup_tRNA_treat-2
GSM5412785
PCR_NGS-Heart-sup_tRNA_treat-3
GSM5412786
PCR_NGS-Heart-sup_tRNA_treat-4
GSM5412787
PCR_NGS-Liver-No_treat-1
GSM5412788
PCR_NGS-Liver-No_treat-2
GSM5412789
PCR_NGS-Liver-No_treat-3
GSM5412790
PCR_NGS-Liver-sup_tRNA_treat-1
GSM5412791
PCR_NGS-Liver-sup_tRNA_treat-2
GSM5412792
PCR_NGS-Liver-sup_tRNA_treat-3
GSM5412793
PCR_NGS-Liver-sup_tRNA_treat-4
GSM5412800
tRNA_MsLV_M_Ctrl1
GSM5412801
tRNA_MsLV_M_Ctrl2
GSM5412802
tRNA_MsLV_M_Ctrl3
GSM5412803
tRNA_MsLV_M_Expr1
GSM5412804
tRNA_MsLV_M_Expr2
GSM5412805
tRNA_MsLV_M_Expr3
GSM5412810
Ribo_PFB_Lib1_NT_rep1
GSM5412811
Ribo_PFB_Lib1_NT_rep2
GSM5412812
Ribo_PFB_Lib2_01G418_rep1
GSM5412813
Ribo_PFB_Lib2_01G418_rep2
GSM5412814
Ribo_PFB_Lib3_05G418_rep1
GSM5412815
Ribo_PFB_Lib3_05G418_rep2
GSM5412816
Ribo_PFB_Lib4_EGFP_rep1
GSM5412817
Ribo_PFB_Lib4_EGFP_rep2
GSM5412818
Ribo_PFB_Lib5_Tyr_rep1
GSM5412819
Ribo_PFB_Lib5_Tyr_rep2
GSM5412820
Ribo_MsLV_M_Ctrl1
GSM5412821
Ribo_MsLV_M_Ctrl2
GSM5412822
Ribo_MsLV_M_Ctrl3
GSM5412823
Ribo_MsLV_M_Expr1
GSM5412824
Ribo_MsLV_M_Expr2
GSM5412825
Ribo_MsLV_M_Expr3
GSM5695277
targeted_tRNA-No_treat-1
GSM5695278
targeted_tRNA-No_treat-2
GSM5695279
targeted_tRNA-No_treat-3
GSM5695280
targeted_tRNA-sup_tRNA_treat-1
GSM5695281
targeted_tRNA-sup_tRNA_treat-2
GSM5695282
targeted_tRNA-sup_tRNA_treat-3
GSM5695283
M1: mRNA_WT_liver_mCherry_rep1
GSM5695284
M4: mRNA_WT_liver_mCherry_rep2
GSM5695285
M7: mRNA_WT_liver_mCherry_rep3
GSM5695286
M10: mRNA_WT_liver_mCherry_rep4
GSM5695287
M13: mRNA_WT_liver_mCherry_rep5
GSM5695288
M2: mRNA_WT_liver_suptRNA_rep1
GSM5695289
M5: mRNA_WT_liver_suptRNA_rep2
GSM5695290
M8: mRNA_WT_liver_suptRNA_rep3
GSM5695291
M11: mRNA_WT_liver_suptRNA_rep4
GSM5695292
M14: mRNA_WT_liver_suptRNA_rep5
GSM5695293
C4: mRNA_hFibroblast_lenti-EGFP_rep1
GSM5695294
C5: mRNA_hFibroblast_lenti-EGFP_rep2
GSM5695295
C6: mRNA_hFibroblast_lenti-EGFP_rep3
GSM5695296
C7: mRNA_hFibroblast_lenti_suptRNA_rep1
GSM5695297
C8: mRNA_hFibroblast_lenti_suptRNA_rep2
GSM5695298
C9: mRNA_hFibroblast_lenti_suptRNA_rep3
This SuperSeries is composed of the following SubSeries:
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GSE179270
AAV-delivered suppressor tRNA overcomes a nonsense mutation in mice (amplicon)
GSE179272
AAV-delivered suppressor tRNA overcomes a nonsense mutation in mice (mim-tRNA)
GSE179274
AAV-delivered suppressor tRNA overcomes a nonsense mutation in mice (ribosome profiling)
GSE189145
AAV-delivered suppressor tRNA overcomes a nonsense mutation in mice (tRNA_charging)
GSE189146
AAV-delivered suppressor tRNA overcomes a nonsense mutation in mice (mRNA-seq)
Relations
BioProject
PRJNA743034
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Format
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Supplementary data files not provided
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