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| Status |
Public on Sep 14, 2021 |
| Title |
Spatial transcriptomics (Visium, Spatial 3' V1, 10x Genomics) analysis of heart tissues in a murine model of Kawasaki disease vasculitis |
| Organism |
Mus musculus |
| Experiment type |
Other
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| Summary |
Spatial transcriptomics (Visium, Spatial 3' V1, 10x Genomics) analysis of heart tissues from Lactobacillus casei cell wall extract (LCWE)-injected mice and control PBS-injected mice
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| Overall design |
Heart from one LCWE-injected and one PBS-injected mice were harvested one week after injection and sectioned to 10µm and used for Visium Spatial Transcriptomics 3' V1
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| Contributor(s) |
Zemmour D, Porritt RA, Rivas MN, Arditi M |
| Citation(s) |
34517723 |
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| Submission date |
Jun 23, 2021 |
| Last update date |
Dec 14, 2021 |
| Contact name |
David Zemmour |
| E-mail(s) |
davidpz@fas.harvard.edu, david.puyraimond@gmail.com
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| Organization name |
Harvard Medical Schol
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| Street address |
77 avenue Louis Pasteur
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| City |
Boston |
| ZIP/Postal code |
02115 |
| Country |
USA |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (2) |
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| Relations |
| BioProject |
PRJNA740838 |
| SRA |
SRP325429 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE178799_RAW.tar |
71.6 Mb |
(http)(custom) |
TAR (of CSV, H5, MTX, PNG, TSV) |
| GSE178799_barcodes.tsv.gz |
13.5 Kb |
(ftp)(http) |
TSV |
| GSE178799_genes.tsv.gz |
7.2 Kb |
(ftp)(http) |
TSV |
| GSE178799_matrix.mtx.gz |
26.1 Mb |
(ftp)(http) |
MTX |
| GSE178799_metadata.tsv.gz |
63.1 Kb |
(ftp)(http) |
TSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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