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Series GSE178686 Query DataSets for GSE178686
Status Public on Jun 01, 2024
Title Quantitative comparison of in vitro and in vivo embryogenesis at a single cell resolution
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Single cell RNA-Seq time-course analysis revealed in vivo mouse gastrulation and in vitro directed differentiation
Overall design Investigation of transcriptome dynamics of hematopoietic stem cell formation using a combinatorial Runx1/Ly6a reporter system
Contributor(s) Tan Y, Spangler A, Farid M, Peng D, Cahan P
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NIH grant(s)
Grant ID Grant title Affiliation Name
R35 GM124725 From intra to intercellular regulatory networks that define cell type identity JOHNS HOPKINS UNIVERSITY Patrick Cahan
Submission date Jun 22, 2021
Last update date Jun 01, 2024
Contact name Patrick Cahan
Organization name Johns Hopkins University
Lab Cahan lab
Street address 733 North Broadway, MRB 653
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (14)
GSM5396091 E7.5 embryo YT_E7-5-1_S3_L001
GSM5396092 E7.5 embryo YT_E7-5-1_S3_L002
GSM5396093 E7.5 embryo YT_E7-5-2_S5_L001
BioProject PRJNA740009
SRA SRP325099

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE178686_embryo_filtered.loom.gz 83.9 Mb (ftp)(http) LOOM
GSE178686_multiseq.loom.gz 237.2 Mb (ftp)(http) LOOM
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Raw data are available in SRA
Processed data are available on Series record

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