GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Series GSE178348
Query DataSets for GSE178348
Status
Public on Feb 24, 2022
Title
TCF-1 mediates 3D genome reconfiguration during T cell development
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation missing
Has this study been published? Please
login
to update or
notify GEO
.
Submission date
Jun 16, 2021
Last update date
May 04, 2022
Contact name
Wenliang Wang
E-mail(s)
bgi.wangwl@gmail.com
Organization name
University of Pennsylvania
Street address
421 Curie Boulevard
City
Philadelphia
State/province
PENNSYLVANIA
ZIP/Postal code
19104
Country
USA
Platforms (3)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL21626
NextSeq 550 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (40)
Less...
More...
GSM5388160
HiChIP Norm_3T3
GSM5388161
HiChIP TCF1_3T3
GSM5388162
HiC DN3 WT
GSM5388163
HiC DN3 Tcf7-KO rep1
GSM5388164
HiC DN3 Tcf7-KO rep2
GSM5388165
ChIP-Seq Normal NIH-3T3 cells - CTCF Rep1
GSM5388166
ChIP-Seq Normal NIH-3T3 cells - CTCF Rep2
GSM5388167
ChIP-Seq TCF1 induced NIH-3T3 cells - CTCF Rep1
GSM5388168
ChIP-Seq TCF1 induced NIH-3T3 cells - CTCF Rep2
GSM5388169
ChIP-Seq Normal NIH-3T3 cells - Smc1
GSM5388170
ChIP-Seq TCF1 induced NIH-3T3 cells - Smc1
GSM5388171
ChIP-Seq TCF1 induced NIH-3T3 cells - TCF1
GSM5388172
ChIP-Seq Wild type DN3 cells - CTCF Rep1
GSM5388173
ChIP-Seq Wild type DN3 cells - CTCF Rep2
GSM5388174
ChIP-Seq TCF1 KO DN3 cells - CTCF Rep1
GSM5388175
ChIP-Seq TCF1 KO DN3 cells - CTCF Rep2
GSM5388176
ChIP-Seq Wild type DN3 cells - Smc1 Rep1
GSM5388177
ChIP-Seq Wild type DN3 cells - Smc1 Rep2
GSM5388178
ChIP-Seq TCF1 KO DN3 cells - Smc1 Rep1
GSM5388179
ChIP-Seq TCF1 KO DN3 cells - Smc1 Rep2
GSM5388180
ChIP-Seq Wild type DN3 cells - TCF1 Rep1
GSM5388181
ChIP-Seq Wild type DN3 cells - TCF1 Rep2
GSM5388182
RNA-Seq Normal 3T3 Rep1
GSM5388183
RNA-Seq Normal 3T3 Rep2
GSM5388184
RNA-Seq TCF1 induced 3T3 Rep1
GSM5388185
RNA-Seq TCF1 induced 3T3 Rep2
GSM5388186
RNA-Seq DN3 wild type Rep1
GSM5388187
RNA-Seq DN3 wild type Rep2
GSM5388188
RNA-Seq DN3 TCF-1 KO Rep1
GSM5388189
RNA-Seq DN3 TCF-1 KO Rep2
GSM5827706
HiC DP Cre+
GSM5827707
HiC DP Tcf7-KO
GSM5827708
ChIP-Seq Wild type DN3 cells - H3K27Ac Rep1
GSM5827709
ChIP-Seq Wild type DN3 cells - H3K27Ac Rep2
GSM5827710
ChIP-Seq TCF1 KO DN3 cells - H3K27Ac Rep1
GSM5827711
ChIP-Seq TCF1 KO DN3 cells - H3K27Ac Rep2
GSM5827712
ChIP-Seq Wild type DN3 cells - NIPBL Rep1
GSM5827713
ChIP-Seq Wild type DN3 cells - NIPBL Rep2
GSM5827714
ChIP-Seq TCF1 KO DN3 cells - NIPBL Rep1
GSM5827715
ChIP-Seq TCF1 KO DN3 cells - NIPBL Rep2
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE178344
TCF-1 mediates 3D genome reconfiguration during T cell development (HiChIP)
GSE178345
TCF-1 mediates 3D genome reconfiguration during T cell development (HiC)
GSE178346
TCF-1 mediates 3D genome reconfiguration during T cell development (ChIP-Seq)
GSE178347
TCF-1 mediates 3D genome reconfiguration during T cell development (RNA-Seq)
Relations
BioProject
PRJNA738524
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE178348_RAW.tar
35.6 Gb
(http)
(custom)
TAR (of BED, BW, HIC, MCOOL, TXT)
SRA Run Selector
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|