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Series GSE174642 Query DataSets for GSE174642
Status Public on Jan 16, 2024
Title Proteome-wide profiling of Transcriptional Machinery on Accessible Chromatin by biotinylated transposon (various cell lines II)
Organisms Homo sapiens; Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary This study introduced a method for directly identifying the transcriptional machinery on accessible chromatin (ATAC-MS) in a proteome scale. The goals of this study are to integrate ATAC-seq with ATAC-MS to investigate the real-time in vivo transcriptional regulatory processes in organisms.
 
Overall design ATAC-seq was applied to identify changes in chromatin accessibility in different cells.
 
Contributor(s) Ding C, Zhang H
Citation(s) 34678055
Submission date May 18, 2021
Last update date Jan 17, 2024
Contact name Haizhu Zhang
E-mail(s) zhz2230@qq.com
Phone 18621062295
Organization name Fudan University
Department Institutes of Biomedical Sciences
Lab He Fuchu Lab
Street address No. 131 Dong'an Road, Xuhui District
City Shanghai
ZIP/Postal code 200032
Country China
 
Platforms (2)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (17)
GSM5321298 293T ATAC-seq
GSM5321299 HeLa ATAC-seq
GSM5321300 HepG2 ATAC-seq
This SubSeries is part of SuperSeries:
GSE174643 Proteome-wide profiling of Transcriptional Machinery on Accessible Chromatin by biotinylated transposon
Relations
BioProject PRJNA730873
SRA SRP320364

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE174642_RAW.tar 17.9 Mb (http)(custom) TAR (of NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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