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Series GSE173285 Query DataSets for GSE173285
Status Public on Apr 24, 2022
Title Chidamide inhibits double expressor lymphoma through repressing Myc expression and activity
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Double-expressor lymphoma (DEL), defined by MYC and BCL-2 overexpression without corresponding chromosome translocations, is often associated with poor outcomes for standard treatment (R-CHOP). Recently, inhibitors of histone deacetylases have shown great effect in T cell lymphomas. However, its effects on B cell lymphomas are mild. Here, our clinical retrospective analysis showed that HDAC inhibitor chidamide combined with R-CHOP (CR-CHOP) can dramatically increase the complete remission rate of patients with DEL. And the sensitivity of B cell lymphoma cell lines to chidamide is negatively correlated to Myc level. From Western blots and transcriptomics analysis, we found that chidamide treatment could reduce Myc protein level and downregulate the transcription levels of corresponding Myc downstream targets. Thus our results indicate that HDAC inhibitor chidamde holds great potential for treating DEL, which likely functions through inhibiting the Myc pathway.
 
Overall design Bulk RNA-seq of JeKo-1/Granta-519 lymphoma cell line treated with Chidamide or vehicle
 
Contributor(s) Li J, Hang X, Liu P, Zhao L, Liu T, Liu Y
Citation(s) 39005667
Submission date Apr 26, 2021
Last update date Aug 08, 2024
Contact name lei zhao
E-mail(s) annie.leeei@gmail.com
Phone 18091842943
Organization name Sichuan University
Department State Key Laboratory of Biotherapy, West China Hospital, Sihcuan University.
Lab Chen & Liu Lab
Street address No.17 Renming road section3
City Chengdu, Cihna
State/province Sichuan
ZIP/Postal code 610041
Country China
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (12)
GSM5264900 Jeko-1-Chidmide_RNAseq_1
GSM5264901 Jeko-1-Chidmide_RNAseq_2
GSM5264902 Jeko-1-Chidmide_RNAseq_3
Relations
BioProject PRJNA725123
SRA SRP316317

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE173285_Jeko_Granta_Chidmide_VS_Vehicle_all_count.csv.gz 417.6 Kb (ftp)(http) CSV
GSE173285_Jeko_Granta_Chidmide_VS_Vehicle_all_tpm.csv.gz 1.2 Mb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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