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Series GSE173190 Query DataSets for GSE173190
Status Public on Apr 24, 2021
Title Bisulfte sequnencing of Wild Type (Col-0), and miP1aOX in Arabidopsis thaliana
Organism Arabidopsis thaliana
Experiment type Methylation profiling by high throughput sequencing
Summary Plants were grown on 1/2 MS for 12 days under LD conditions and DNA was extracted and sequenced
 
Overall design Examination of two genotypes (wild type/miP1aOX) and one condition with one replicates each
 
Contributor(s) Straub D, Wenkel S
Citation(s) 34015131
Submission date Apr 23, 2021
Last update date Sep 14, 2021
Contact name Bin Sun
E-mail(s) SunBin0909@hotmail.com
Organization name Copenhagen Plant Science Centre – University of Copenhagen
Department Department of Plant and Environmental Sciences
Lab Stephan Wenkel's Lab
Street address Thorvaldsensvej 40
City Frederiksberg C
ZIP/Postal code 1871
Country Denmark
 
Platforms (1)
GPL13222 Illumina HiSeq 2000 (Arabidopsis thaliana)
Samples (2)
GSM5261687 Bisulfite-seq_Col-0 rep1
GSM5261688 Bisulfite-seq_miP1aOX rep1
This SubSeries is part of SuperSeries:
GSE173192 Bisulfte sequnencing and DNA-seq of miP1aOX in Arabidopsis thaliana
Relations
BioProject PRJNA724664
SRA SRP316032

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE173190_ALLDATA.csv.gz 3.5 Mb (ftp)(http) CSV
GSE173190_MERGEDheatmap_HOMERannotated.csv.gz 14.6 Kb (ftp)(http) CSV
GSE173190_RAW.tar 248.2 Mb (http)(custom) TAR (of BIGWIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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