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Series GSE172843 Query DataSets for GSE172843
Status Public on Apr 22, 2021
Title ATAC-seq from hematopoietic stem cell (ENCSR366VBB)
Project Mouse ENCODE
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR366VBB/
 
Citation(s) 22955616
BioProject PRJNA63471
Submission date Apr 21, 2021
Last update date May 07, 2021
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (2)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (2)
GSM5258887 ATAC-seq from hematopoietic stem cell (ENCLB242XPG)
GSM5258888 ATAC-seq from hematopoietic stem cell (ENCLB328JAB)

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE172843_ENCFF209SYF_pseudoreplicated_peaks_mm10.bigBed 5.8 Mb (ftp)(http) BIGBED
GSE172843_ENCFF257AOI_IDR_thresholded_peaks_mm10.bed.gz 1.4 Mb (ftp)(http) BED
GSE172843_ENCFF292GMX_replicated_peaks_mm10.bed.gz 2.6 Mb (ftp)(http) BED
GSE172843_ENCFF364EGL_signal_p-value_mm10.bigWig 556.8 Mb (ftp)(http) BIGWIG
GSE172843_ENCFF386JJJ_pseudoreplicated_peaks_mm10.bed.gz 2.9 Mb (ftp)(http) BED
GSE172843_ENCFF470DPT_IDR_ranked_peaks_mm10.bed.gz 5.5 Mb (ftp)(http) BED
GSE172843_ENCFF495FTV_replicated_peaks_mm10.bigBed 5.3 Mb (ftp)(http) BIGBED
GSE172843_ENCFF537LQC_IDR_ranked_peaks_mm10.bed.gz 6.0 Mb (ftp)(http) BED
GSE172843_ENCFF566MSZ_conservative_IDR_thresholded_peaks_mm10.bed.gz 1.1 Mb (ftp)(http) BED
GSE172843_ENCFF802VYT_fold_change_over_control_mm10.bigWig 822.9 Mb (ftp)(http) BIGWIG
GSE172843_ENCFF888ZLU_IDR_thresholded_peaks_mm10.bigBed 3.2 Mb (ftp)(http) BIGBED
GSE172843_ENCFF920EIB_conservative_IDR_thresholded_peaks_mm10.bigBed 2.5 Mb (ftp)(http) BIGBED
GSE172843_RAW.tar 8.1 Gb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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