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Series GSE172130 Query DataSets for GSE172130
Status Public on Sep 07, 2021
Title An integrated CUT&RUN quality control workflow for histone modifications and transcription factors
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Genome-wide analysis of H3K4me3 and Ikaros profiles in fresh or frozen mouse splenic B cells via CUT&RUN
Overall design We created CUT&RUN profiles of H3K4me3, Ikaros, and IgG in wild-type B cells (fresh and frozen).
Contributor(s) Frietze S, Boyd J
Citation(s) 34544495, 36698077
Submission date Apr 15, 2021
Last update date Feb 08, 2023
Contact name Michaela Reagan
Organization name MaineHealth Institute for Research
Department Center for Molecular Medicine
Street address 81 Research Drive
City Scarborough
State/province Maine
ZIP/Postal code 04074
Country USA
Platforms (1)
GPL18480 Illumina HiSeq 1500 (Mus musculus)
Samples (8)
GSM5242405 WT_H3K4me3_fresh_rep1
GSM5242406 WT_H3K4me3_frozen_rep1
GSM5242407 WT_H3K4me3_frozen_rep2
BioProject PRJNA722185
SRA SRP314945

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE172130_RAW.tar 4.4 Mb (http)(custom) TAR (of NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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