|
| Status |
Public on Jun 10, 2022 |
| Title |
Dynamics of synthetic yeast chromosome evolution shaped by hierarchical chromatin structures |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Other
|
| Summary |
To investigate the mechanisms underlying the rearrangement patterns,we compared the rearrangement map with local chromatin structures and the three-dimensional genome architecture via assay for transposase-accessible chromatin using sequencing (ATAC-seq) and genome-wide chromosome conformation capture (Hi-C), respectively
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| |
|
| Overall design |
ATAC-seq and Hi-C of synthetic strain yZSJ025
|
| |
|
| Contributor(s) |
Yuan Y, Wu Y, Zhou S |
| Citation(s) |
37223244 |
| |
| Submission date |
Mar 03, 2021 |
| Last update date |
Aug 10, 2023 |
| Contact name |
Zhou Sijie |
| E-mail(s) |
sjzhou@tju.edu.cn
|
| Organization name |
Tianjin Unversity
|
| Street address |
No.135 Yaguan road
|
| City |
Tianjin |
| ZIP/Postal code |
a8521102 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL27812 |
Illumina NovaSeq 6000 (Saccharomyces cerevisiae) |
|
| Samples (4)
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|
| Relations |
| BioProject |
PRJNA706408 |
| SRA |
SRP309144 |
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