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GEO help: Mouse over screen elements for information. |
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| Status |
Public on May 09, 2021 |
| Title |
PHAROH lncRNA regulates c-Myc translation in hepatocellular carcinoma via sequestering TIAR |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by array
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| Summary |
Hepatocellular carcinoma, the most common type of liver malignancy, is one of the most lethal forms of cancer. We identified a long non-coding RNA, Gm19705, that is over-expressed in hepatocellular carcinoma and mouse embryonic stem cells. We named this RNA Pluripotency and Hepatocyte Associated RNA Overexpressed in HCC, or PHAROH. Depletion of PHAROH impacts cell proliferation and migration, which can be rescued by ectopic expression of PHAROH. RNA-seq analysis of PHAROH knockouts revealed that a large number of genes with decreased expression contain a c-Myc motif in their promoter. C-MYC is decreased at the protein level, but not the mRNA level. RNA-antisense pulldown identified nucleolysin TIAR, a translational repressor, to bind to a 71-nt hairpin within PHAROH, sequestration of which increases c-MYC translation. In summary, our data suggest that PHAROH regulates c-MYC translation by sequestering TIAR and as such represents a potentially exciting diagnostic or therapeutic target in hepatocellular carcinoma.
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| Overall design |
RNA-seq: Transcriptome profiles of sgRenilla control and PHAROH KO cells
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| Contributor(s) |
Yu AT, Spector DL |
| Citation missing |
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| Submission date |
Feb 23, 2021 |
| Last update date |
May 12, 2021 |
| Contact name |
Allen Tingjun Yu |
| E-mail(s) |
alyu@cshl.edu
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| Organization name |
CSHL
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| Lab |
Spector Lab
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| Street address |
1 Bungtown Road
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| City |
Cold Spring Harbor |
| State/province |
NY |
| ZIP/Postal code |
11724 |
| Country |
USA |
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| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
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| Samples (4)
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| Relations |
| BioProject |
PRJNA704277 |
| SRA |
SRP307692 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE167316_RAW.tar |
880.0 Kb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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