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Series GSE166835 Query DataSets for GSE166835
Status Public on Aug 10, 2021
Title Parallel characterization of cis-Regulatory Elements for Multiple Genes using CRISPRpath [ChIP-seq]
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Here, we describe CRISPRpath, a CRISPR screening strategy for simultaneously characterizing CREs in multiple genomic loci by leveraging converging phenotypes resulted from transcriptional defects in genes linked to the same biological pathway.
 
Overall design Examination of histone modification (H3K27ac) in WTC11 human iPSCs.
 
Contributor(s) Ren X, Shen Y
Citation(s) 34524848
Submission date Feb 16, 2021
Last update date Sep 29, 2021
Contact name Yin Shen
E-mail(s) Yin.Shen@ucsf.edu
Phone 4155023403
Organization name UCSF
Department Department of Neurology
Lab Shen Lab
Street address 513 Parnassus Ave
City SAN FRANCISCO
State/province CALIFORNIA
ZIP/Postal code 94143-0410
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (4)
GSM5086283 WTC11 iPSCs - H3K27ac_input_rep1
GSM5086284 WTC11 iPSCs - H3K27ac_input_rep2
GSM5086285 WTC11 iPSCs - H3K27ac_rep1
This SubSeries is part of SuperSeries:
GSE166839 Parallel characterization of cis-Regulatory Elements for Multiple Genes using CRISPRpath
Relations
BioProject PRJNA702100
SRA SRP306648

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE166835_H3K27ac.bw 1.2 Gb (ftp)(http) BW
GSE166835_H3K27ac_input.bw 890.3 Mb (ftp)(http) BW
GSE166835_H3K27ac_peaks.narrowPeak.gz 547.9 Kb (ftp)(http) NARROWPEAK
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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