|
| Status |
Public on Feb 09, 2021 |
| Title |
Single cell transcriptional profiling of embryonic mouse nephrogenic zone |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
A single-cell RNA-Seq data set was generated using the 10x Genomic platform from E16.5 mice kidney nephrogenic zone cells.
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| |
|
| Overall design |
We isolated and digested embryonic kidneys at E16.5 following a published protocol (Brown et al., 2015). The resultant single cell suspension was passed through 10x Genomics Chromium v1 to produce a scRNA-Seq data set.
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| |
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| Contributor(s) |
Ransick A, Guo Q, McMahon AP |
| Citation(s) |
33587034 |
| |
| Submission date |
Feb 09, 2021 |
| Last update date |
Feb 16, 2021 |
| Contact name |
Andrew P McMahon |
| E-mail(s) |
amcmahon@med.usc.edu
|
| Phone |
323-442-7847
|
| Organization name |
University of Southern California
|
| Department |
Stem Cell Biol & Regen Med
|
| Lab |
Andrew McMahon
|
| Street address |
1425 San Pablo St, BCC 312
|
| City |
Los Angeles |
| State/province |
California |
| ZIP/Postal code |
90033 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
|
| Samples (1) |
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| This SubSeries is part of SuperSeries: |
| GSE131119 |
Genome-wide map of open chromatin, trancription factor occupancy, chromatin marks and gene expression profiles in mouse nephron progenitor cells |
|
| Relations |
| BioProject |
PRJNA700990 |
| SRA |
SRP305510 |
