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Series GSE166117 Query DataSets for GSE166117
Status Public on Feb 04, 2021
Title PolyA-selected RNA expression in whole brains of male BN-Lx/CubPrin and SHR/OlaIpcvPrin
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary As part of the PhenoGen Project (, RNA-Seq data has been collected from whole brain samples of two inbred strains that represent the parental strains from the HXB/BXH recombinant inbred panel, which is part of the Hybrid Rat Diversity Panel. Processed data were generated as part of manuscript, Aptardi predicts polyadenylation sites in sample-specific transcriptomes using high throughput RNA sequencing and DNA sequence.
Overall design RNA expression levels were examined in 6 male rat whole brain samples. Rats were from two inbred strains, BN-Lx/CubPrin and SHR/OlaIpcvPrin.
Contributor(s) Tabakoff B, Hoffman PL, Saba LM, Lusk RJ
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Submission date Feb 03, 2021
Last update date Feb 07, 2021
Contact name Laura Maren Saba
Organization name University of Colorado Anschutz Medical Campus
Department Pharmaceutical Sciences
Street address 12850 East Montview Blvd.
City Aurora
State/province CO
ZIP/Postal code 80045
Country USA
Platforms (1)
GPL14844 Illumina HiSeq 2000 (Rattus norvegicus)
Samples (6)
GSM5061947 SHR rat 1
GSM5061948 SHR rat 2
GSM5061949 SHR rat 3
BioProject PRJNA699291
SRA SRP304587

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE166117_RAW.tar 9.9 Mb (http)(custom) TAR (of TXT)
GSE166117_gene_counts.txt.gz 625.3 Kb (ftp)(http) TXT
GSE166117_stranded_aptardi.gtf.gz 9.1 Mb (ftp)(http) GTF
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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