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Series GSE164434 Query DataSets for GSE164434
Status Public on Jul 07, 2021
Title Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization
Organism Xenopus laevis
Experiment type Other
Summary Hi-C on reconstituted mitotic chromosomes in Xenopus system in IGG or specific depleted egg extracts to study to role of condensin and linker histone in chromosome condensation
 
Overall design Hi-C on reconstituted mitotic chromosomes in Xenopus system
 
Contributor(s) Choppakatla P, Dekker B,  Cutts EE, Vannini A, Dekker J, Funabiki H
Citation(s) 34406118
Submission date Jan 08, 2021
Last update date Sep 14, 2021
Contact name Bastiaan Dekker
E-mail(s) bastiaan.dekker@umassmed.edu
Organization name University of Massachusetts Medical School
Department Systems Biology
Lab Dekker lab
Street address 368 Plantation street
City Worcester
State/province Massachusetts
ZIP/Postal code 01605
Country USA
 
Platforms (1)
GPL22393 Illumina HiSeq 4000 (Xenopus laevis)
Samples (25)
GSM5009568 BDXNY-Xen-mitotic-Separose-H3H4-R1-T1
GSM5009569 BDXNY-Xen-mitotic-control-IGG-R2-T1
GSM5009570 BDXNY-Xen-mitotic-H3H4-dep-R1-T1
Relations
BioProject PRJNA690708
SRA SRP300874

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE164434_RAW.tar 7.4 Gb (http)(custom) TAR (of MCOOL)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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