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Series GSE163800 Query DataSets for GSE163800
Status Public on Dec 23, 2023
Title The epigenetic effects induced by ectopic expression of Pax7 in 3T3-L1
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary We report the robustness and plasticity of the differentiation potential of 3T3L1 adipocytes in the aspect of genome-wide change of chromatin structure by ectopic expression of Pax7 and classifying the genes potentially responsible for facilitating or suppressing trans-differentiation of 3T3L1 in the aspect of epigenetic regulation..
Overall design We performed RNA-seq and ChIP-seq in control or Pax7 stably expressed 3T3-L1 adipocytes during adipocyte differentiation.
Contributor(s) Elgaabari A, Miyawaki-Kuwakado A, Tomimatsu K, Wu Q, Izumi W, Suzuki T, Tokunaga K, Anderson JE, Tatsumi R, Ohkawa Y, Nakamura M
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Submission date Dec 23, 2020
Last update date Dec 23, 2023
Contact name Yasuyuki Ohkawa
Organization name Medical Institute of Bioregulation
Lab Division of Transcriptomics
Street address 3-1-1 Maidashi
City Fukuoka
ZIP/Postal code 8128582
Country Japan
Platforms (2)
GPL18480 Illumina HiSeq 1500 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (28)
GSM4987639 Control_H3K27ac_rep1_input
GSM4987640 Control_H3K27ac_rep1_sample
GSM4987641 Control_H3K27me3_rep1_input
BioProject PRJNA687599
SRA SRP299186

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE163800_CEL0428raw_Izumi_Pax73T3_countmatrix_genename.csv.gz 573.7 Kb (ftp)(http) CSV
GSE163800_CEL0428raw_Izumi_Pax73T3_normalizedcount_genename.csv.gz 1.3 Mb (ftp)(http) CSV
GSE163800_Izumi_0114_Pax73T3_ChIP_TSS_pm2p5kb_bowtie2_20200930_normcount_H3K27ac_sample_genename.csv.gz 286.4 Kb (ftp)(http) CSV
GSE163800_Izumi_0114_Pax73T3_ChIP_TSS_pm2p5kb_bowtie2_20200930_normcount_H3K27me3_sample_genename.csv.gz 194.5 Kb (ftp)(http) CSV
GSE163800_RAW.tar 1.3 Gb (http)(custom) TAR (of BW)
GSE163800_multicov_Izumi_0114_Pax73T3_ChIP_TSS_pm2p5kb_bowtie2_20200930_CountMatrix.csv.gz 2.1 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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