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Series GSE163765 Query DataSets for GSE163765
Status Public on May 04, 2021
Title Transcriptome analysis of mouse preimplantation embryos when DNA damage checkpoint is perturbed
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary To investigate the importance of DNA damage checkpoint regulation in mammalian preimplantation embryos, we overexpressed wild type and mutant form of CHK1 kinase in mouse zygotes and performed high-throughput RNA-sequencing of zygotes, late 2-cell embryos and blastocysts. Transcriptome analysis revealed that zygotes are particular sensitive to the perturbation of Chk1 governed DNA damage checkpoint. However, once zygotes can overcome DNA damage checkpoint induced cell cycle arrest, they can still have normal development.
 
Overall design Microinjection of mRNA encoding wt and mutant CHK1 in early mouse zygotes, then treat with or without Chk1 inhibitor for short-term, then perform high-throughput RNA-sequencing of zygotes, late 2-cell embryos and blastocysts.
 
Contributor(s) Na J, Wang T, Guo J
Citation(s) 33948904
Submission date Dec 23, 2020
Last update date Aug 16, 2021
Contact name Ting WANG
E-mail(s) wang-t16@mails.tsinghua.edu.cn
Organization name Tsinghua University
Street address Qinghuayuan Street
City Beijing
ZIP/Postal code 100084
Country China
 
Platforms (1)
GPL21273 HiSeq X Ten (Mus musculus)
Samples (34)
GSM4986708 WT zy rep1
GSM4986709 WT zy rep2
GSM4986710 WT zy rep3
Relations
BioProject PRJNA687487
SRA SRP299085

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE163765_Blastocyst_fpkm.txt.gz 765.9 Kb (ftp)(http) TXT
GSE163765_Late_2-cell_count.txt.gz 527.0 Kb (ftp)(http) TXT
GSE163765_Late_2-cell_fpkm.txt.gz 580.7 Kb (ftp)(http) TXT
GSE163765_Zygote_count.txt.gz 593.4 Kb (ftp)(http) TXT
GSE163765_Zygote_fpkm.txt.gz 659.7 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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