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Series GSE162763 Query DataSets for GSE162763
Status Public on Apr 12, 2022
Title 16S sequencing of mouse gut microbial DNA after 10 days of intermittent fasting or ad libitum with and without vancomycin treatment
Organism Mus musculus
Experiment type Other
Summary To compare the changes in the gut microbial composition in the cecum of mice following the 4 treatments (IFvsAL with(out) vancomycin co-treatment)
Overall design Mice (6-8 weeks) underwent following procedures: a) 10 days of ad libitum food supply b) 10 days of intermittent fasting c) 10 days of ad libitum food co-treated with vancomycin in the drinking water (50mg/kg/day; 214.27 mg/l) d) 10 days of intermittent fasting food cotreated with vancomycin in the drinking water. The cecum content was removed and microbial genomic DNA extracted.
Contributor(s) Serger E, Bello AT, Di Giovanni S
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Submission date Dec 07, 2020
Last update date Apr 12, 2022
Contact name Elisabeth Serger
Phone 07803362113
Organization name Imperial College London
Department Brain Sciences
Lab Simone Di Giovanni
Street address Du Cane Road
City London
State/province London
ZIP/Postal code W12 0NN
Country United Kingdom
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (32)
GSM4959459 AL1
GSM4959460 AL2
GSM4959461 AL3
BioProject PRJNA682987
SRA SRP296766

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Supplementary file Size Download File type/resource
GSE162763_DESeq2_Results.xlsx 108.2 Kb (ftp)(http) XLSX
GSE162763_percentage_abundances.xlsx 17.8 Kb (ftp)(http) XLSX
GSE162763_psc-asv.csv.gz 31.3 Kb (ftp)(http) CSV
GSE162763_psc-meta.csv.gz 444 b (ftp)(http) CSV
GSE162763_psc-tax.csv.gz 24.5 Kb (ftp)(http) CSV
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Processed data are available on Series record

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