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Series GSE162307 Query DataSets for GSE162307
Status Public on Jul 17, 2021
Title Satellite cell depletion results in a cryptic subpopulation of myonuclei in response to exercise
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Skeletal muscle is composed of post-mitotic myofibers that form a syncytium containing hundreds of myonuclei. Using a progressive exercise training model in the mouse and single nucleus RNA-sequencing (snRNA-seq) for high resolution characterization of myonuclear transcription, we show myonuclear functional specialization in muscle from sedentary mice that is altered by 4 weeks of exercise training. Furthermore, in response to exercise, snRNA-seq reveals that resident muscle stem cells, satellite cells, were activated, but demonstrated limited lineage progression while contributing to muscle adaption. In the absence of satellite cells, trajectory analysis predicts the emergence of cryptic myonuclei that appear to lose their canonical identity. These data illustrate how myonuclear adaptation to exercise may be disrupted under conditions satellite cell compromise.
 
Overall design We used a genetic mouse model to fluorescently label and purify myonuclei from skeleletal muscle to investigate single-myonuclear transcriptomes using single-nucleus RNA-sequencing. Additionally, we used a translatable model of exercise training in conjunction with a mouse model of inducible satellite cell (skeletal muscle precursor cells) ablation to study single-nuclear transcriptomic changes after 4-weeks of exercise training at 4 and 24 hours after the last bout of exercise.
 
Contributor(s) Wen Y, Englund DA, McCarthy JJ, Peterson CA
Citation(s) 34368654
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 AR060701 Novel Roles for Satellite Cells in Adult Skeletal Muscle Adaptation UNIVERSITY OF KENTUCKY RESEARCH FOUNDATION JOHN Joseph MCCARTHY
R01 AG049806 The effects of exercise on satellite cell dynamics during aging UNIVERSITY OF KENTUCKY RESEARCH FOUNDATION CHARLOTTE A. PETERSON
F32 AR071753 Fusion-Independent Roles of Satellite Cells in Muscle Adaptation UNIVERSITY OF KENTUCKY RESEARCH FOUNDATION Kevin Murach
K99 AG063994 Myonuclear Epigenetics of Skeletal Muscle Mass Regulation with Age UNIVERSITY OF KENTUCKY RESEARCH FOUNDATION Kevin Murach
F31 AR075364 Determining the fiber type-specific requirements for satellite cells during skeletal muscle hypertrophy UNIVERSITY OF KENTUCKY RESEARCH FOUNDATION Davis A. Englund
Submission date Nov 29, 2020
Last update date Aug 11, 2021
Contact name Yuan Wen
E-mail(s) ywen2@g.uky.edu
Phone 8592186846
Organization name University of Kentucky
Street address 760 Press Ave
City Lexington
State/province Kentucky
ZIP/Postal code 40536
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (5)
GSM4948866 H2B_Pla_Sol_Sedentary
GSM4948867 VEH4_Sol_Exercised
GSM4948868 VEH24_Sol_Exercised
Relations
BioProject PRJNA681403
SRA SRP294967

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Supplementary file Size Download File type/resource
GSE162307_RAW.tar 193.0 Mb (http)(custom) TAR (of LOOM)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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