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Series GSE161905 Query DataSets for GSE161905
Status Public on Jul 15, 2021
Title Single cell sequencing of posterior axis development in gallus gallus
Organism Gallus gallus
Experiment type Expression profiling by high throughput sequencing
Summary Single cell analysis of 3 developmental stages to study the progenitors of axis formation
Overall design Dissection of stage 5, 6 somites and 35 somites
Stage 5 HH files: st51.counts.tsv.gz; st52.counts.tsv.gz; st5_cell_names.txt ;st5_cell_bc_seqs.txt ; st5_gene_names.txt
Stage 6 somites: 6s1.counts.tsv.gz; 6s2.counts.tsv.gz; 6s_cell_names.txt ;6s_cell_bc_seqs.txt ; 6s_gene_names.txt
Stage 35 somites: 35s1.counts.tsv.gz; 35s2.counts.tsv.gz; 35s_cell_names.txt ;35s_cell_bc_seqs.txt ; 35s_gene_names.txt
Contributor(s) Guillot C, Pourquie O
Citation(s) 34227938
Submission date Nov 20, 2020
Last update date Jul 15, 2021
Contact name Charlene Guillot (Ryan)
Phone 8579192539
Organization name Brigham and Women's hospital
Department Pathology
Lab Olivier Pourquie
Street address 60 Fenwood Road
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platforms (1)
GPL19787 Illumina NextSeq 500 (Gallus gallus)
Samples (1)
GSM4923248 stage 5 HH, 6 somites and 35 somites
BioProject PRJNA679887
SRA SRP294286

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE161905_35s1.counts.tsv.gz 3.1 Mb (ftp)(http) TSV
GSE161905_35s1_cell_bc_seqs.txt.gz 107 b (ftp)(http) TXT
GSE161905_35s1_cell_names.txt.gz 13.6 Kb (ftp)(http) TXT
GSE161905_35s2.counts.tsv.gz 3.3 Mb (ftp)(http) TSV
GSE161905_35s2_cell_bc_seqs.txt.gz 106 b (ftp)(http) TXT
GSE161905_35s2_cell_names.txt.gz 13.5 Kb (ftp)(http) TXT
GSE161905_35s_gene_names.txt.gz 32.7 Kb (ftp)(http) TXT
GSE161905_6s1.counts.tsv.gz 4.9 Mb (ftp)(http) TSV
GSE161905_6s1_cell_bc_seqs.txt.gz 258 b (ftp)(http) TXT
GSE161905_6s1_cell_names.txt.gz 74.3 Kb (ftp)(http) TXT
GSE161905_6s1_gene_names.txt.gz 32.7 Kb (ftp)(http) TXT
GSE161905_6s2.counts.tsv.gz 5.0 Mb (ftp)(http) TSV
GSE161905_6s2_cell_bc_seqs.txt.gz 262 b (ftp)(http) TXT
GSE161905_6s2_cell_names.txt.gz 76.5 Kb (ftp)(http) TXT
GSE161905_6s_gene_names.txt.gz 32.7 Kb (ftp)(http) TXT
GSE161905_README_samples_information.txt 1.8 Kb (ftp)(http) TXT
GSE161905_st51.counts.tsv.gz 8.1 Mb (ftp)(http) TSV
GSE161905_st51_cell_bc_seqs.txt.gz 260 b (ftp)(http) TXT
GSE161905_st51_cell_names.txt.gz 74.6 Kb (ftp)(http) TXT
GSE161905_st52.counts.tsv.gz 8.5 Mb (ftp)(http) TSV
GSE161905_st52_cell_bc_seqs.txt.gz 241 b (ftp)(http) TXT
GSE161905_st52_cell_names.txt.gz 67.2 Kb (ftp)(http) TXT
GSE161905_st5_gene_names.txt.gz 32.7 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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