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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Aug 10, 2022 |
| Title |
Single-cell RNA-seq of mouse peripheral iNKT cells |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Invariant natural killer T cells (iNKT) cells are differently distributed in various immune organs. However, it remains unclear whether iNKT cells exhibit phenotypical and functional differences in different peripheral organs and how thymic iNKT migrate to peripheral organs. Hence, characterizing iNKT cells in peripheral organs is important.
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| Overall design |
We profiled the transcriptome patterns of individual mouse peripheral iNKT cells from liver, lymph node, and spleen using a droplet-based single-cell RNA-sequencing (scRNA-seq) approach.
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| Contributor(s) |
Wang J, Loveless I, Adrianto I, Liu T, Kalpana S, Wu X, Wu X, Zhou L, Mi Q |
| Citation(s) |
35915069 |
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| Submission date |
Nov 14, 2020 |
| Last update date |
Aug 11, 2022 |
| Contact name |
Indra Adrianto |
| E-mail(s) |
iadrian1@hfhs.org
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| Phone |
313-874-5999
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| Organization name |
Henry Ford Health System
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| Department |
Public Health Sciences
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| Street address |
1 Ford Place
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| City |
Detroit |
| State/province |
MI |
| ZIP/Postal code |
48202 |
| Country |
USA |
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| Platforms (1) |
| GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA678450 |
| SRA |
SRP292584 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE161495_RAW.tar |
53.4 Mb |
(http)(custom) |
TAR (of MTX, TSV) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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